Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LJC78_RS07860 Genome accession   NZ_CP086007
Coordinates   1483842..1484306 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478842..1489306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS07840 (LJC78_07840) kinA 1479313..1481142 (+) 1830 WP_014479653.1 sporulation histidine kinase KinA -
  LJC78_RS07845 (LJC78_07845) dapX 1481139..1482320 (-) 1182 WP_014479654.1 aminotransferase A -
  LJC78_RS07850 (LJC78_07850) - 1482522..1482683 (-) 162 WP_003245246.1 hypothetical protein -
  LJC78_RS07855 (LJC78_07855) cheV 1482887..1483798 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  LJC78_RS07860 (LJC78_07860) kre 1483842..1484306 (-) 465 WP_003232406.1 YkyB family protein Regulator
  LJC78_RS07865 (LJC78_07865) ykuC 1484432..1485724 (-) 1293 WP_014479656.1 MFS transporter -
  LJC78_RS07870 (LJC78_07870) ltdD 1485800..1486294 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  LJC78_RS07875 (LJC78_07875) ppeE 1486351..1487211 (-) 861 WP_003232400.1 metallophosphoesterase -
  LJC78_RS07880 (LJC78_07880) fadH 1487354..1488118 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=621961 LJC78_RS07860 WP_003232406.1 1483842..1484306(-) (kre) [Bacillus subtilis subsp. natto strain SCP010-1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=621961 LJC78_RS07860 WP_003232406.1 1483842..1484306(-) (kre) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1