Detailed information NTG0621908

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: NX823_RS13310
• Genome accession: NZ_CP103352
• Coordinates: 2493606..2494733 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM117508
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2488606..2499733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NX823_RS13285 (NX823_13285)	-	2488653..2488865 (-)	213	Protein_2569	recombinase family protein	-
NX823_RS13290 (NX823_13290)	fumC	2489084..2490472 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
NX823_RS13295 (NX823_13295)	-	2490639..2491529 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
NX823_RS13300 (NX823_13300)	-	2492471..2492866 (+)	396	WP_046160622.1	VOC family protein	-
NX823_RS13310 (NX823_13310)	rapC	2493606..2494733 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
NX823_RS22075 (NX823_13315)	-	2494915..2495748 (+)	834	Protein_2574	ribonuclease YeeF family protein	-
NX823_RS22080 (NX823_13320)	-	2496134..2496841 (+)	708	WP_014480330.1	hypothetical protein	-
NX823_RS13325 (NX823_13325)	-	2496855..2497142 (+)	288	WP_014480331.1	hypothetical protein	-
NX823_RS13330 (NX823_13330)	-	2497545..2497985 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
NX823_RS13335 (NX823_13335)	-	2498084..2498536 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
NX823_RS13340 (NX823_13340)	cdiI	2498633..2498992 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
NX823_RS13345 (NX823_13345)	-	2499097..2499576 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=621908 NX823_RS13310 WP_014480328.1 2493606..2494733(-) (rapC) [Bacillus subtilis strain SRCM117508]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=621908 NX823_RS13310 WP_014480328.1 2493606..2494733(-) (rapC) [Bacillus subtilis strain SRCM117508]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397