Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | LJY16_RS02465 | Genome accession | NZ_CP085981 |
| Coordinates | 451745..452350 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica strain SZL 30 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 418146..460610 | 451745..452350 | within | 0 |
Gene organization within MGE regions
Location: 418146..460610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJY16_RS02335 (LJY16_02335) | ldtD | 418186..420033 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| LJY16_RS02340 (LJY16_02340) | - | 420293..420841 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| LJY16_RS02345 (LJY16_02345) | - | 420869..421516 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| LJY16_RS02350 (LJY16_02350) | - | 421614..422867 (+) | 1254 | Protein_390 | IS3-like element ISSen1 family transposase | - |
| LJY16_RS02355 (LJY16_02355) | aspC | 422891..424081 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| LJY16_RS02360 (LJY16_02360) | ompF | 424266..425357 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| LJY16_RS02365 (LJY16_02365) | asnS | 425964..427364 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| LJY16_RS02370 (LJY16_02370) | - | 427565..428026 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| LJY16_RS02375 (LJY16_02375) | dpaL | 428343..429557 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| LJY16_RS02380 (LJY16_02380) | - | 429803..431236 (+) | 1434 | WP_000893191.1 | alanine/glycine:cation symporter family protein | - |
| LJY16_RS02385 (LJY16_02385) | pncB | 431317..432519 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| LJY16_RS02390 (LJY16_02390) | pepN | 432786..435398 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| LJY16_RS02395 (LJY16_02395) | pyrD | 435606..436616 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| LJY16_RS02400 (LJY16_02400) | zapC | 436782..437324 (+) | 543 | WP_023993511.1 | cell division protein ZapC | - |
| LJY16_RS02405 (LJY16_02405) | - | 437321..438430 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| LJY16_RS02410 (LJY16_02410) | rlmKL | 438529..440637 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| LJY16_RS02415 (LJY16_02415) | - | 440650..442557 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| LJY16_RS02420 (LJY16_02420) | pqiA | 442572..443825 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| LJY16_RS02425 (LJY16_02425) | pqiB | 443830..445470 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| LJY16_RS02430 (LJY16_02430) | pqiC | 445467..446030 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| LJY16_RS02435 (LJY16_02435) | rmf | 446286..446453 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| LJY16_RS02440 (LJY16_02440) | fabA | 446553..447071 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| LJY16_RS02445 (LJY16_02445) | - | 447140..448900 (-) | 1761 | WP_000156457.1 | AAA family ATPase | - |
| LJY16_RS02450 (LJY16_02450) | matP | 449086..449538 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| LJY16_RS02455 (LJY16_02455) | ompA | 449610..450662 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| LJY16_RS02460 (LJY16_02460) | sulA | 451019..451528 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| LJY16_RS02465 (LJY16_02465) | sxy/tfoX | 451745..452350 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| LJY16_RS02470 (LJY16_02470) | yccS | 452337..454490 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| LJY16_RS02475 (LJY16_02475) | - | 454509..454955 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| LJY16_RS02480 (LJY16_02480) | helD | 455079..457133 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| LJY16_RS02485 (LJY16_02485) | mgsA | 457169..457627 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| LJY16_RS02490 (LJY16_02490) | - | 457722..458384 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| LJY16_RS02495 (LJY16_02495) | - | 458558..458971 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| LJY16_RS02500 (LJY16_02500) | hspQ | 459016..459333 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| LJY16_RS02505 (LJY16_02505) | rlmI | 459391..460602 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=621865 LJY16_RS02465 WP_001202375.1 451745..452350(+) (sxy/tfoX) [Salmonella enterica strain SZL 30]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=621865 LJY16_RS02465 WP_001202375.1 451745..452350(+) (sxy/tfoX) [Salmonella enterica strain SZL 30]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |