Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LK449_RS05545 Genome accession   NZ_CP085975
Coordinates   1342589..1343968 (+) Length   459 a.a.
NCBI ID   WP_008148458.1    Uniprot ID   -
Organism   Parabacteroides johnsonii strain FDAARGOS_1580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337589..1348968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK449_RS05530 (LK449_05530) - 1338919..1341030 (+) 2112 WP_008148453.1 KamA family radical SAM protein -
  LK449_RS05535 (LK449_05535) - 1341074..1341607 (+) 534 WP_008148455.1 ferredoxin domain-containing protein -
  LK449_RS05540 (LK449_05540) - 1341611..1342567 (+) 957 WP_008148457.1 hypothetical protein -
  LK449_RS05545 (LK449_05545) radA 1342589..1343968 (+) 1380 WP_008148458.1 DNA repair protein RadA Machinery gene
  LK449_RS05550 (LK449_05550) - 1343981..1344964 (+) 984 WP_021862304.1 hypothetical protein -
  LK449_RS05555 (LK449_05555) - 1344961..1345659 (+) 699 WP_008148463.1 hypothetical protein -
  LK449_RS05560 (LK449_05560) - 1345662..1347266 (+) 1605 WP_021862305.1 NAD(P)/FAD-dependent oxidoreductase -
  LK449_RS05565 (LK449_05565) - 1347766..1348737 (+) 972 WP_227963160.1 IS30 family transposase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50143.94 Da        Isoelectric Point: 6.4998

>NTDB_id=621826 LK449_RS05545 WP_008148458.1 1342589..1343968(+) (radA) [Parabacteroides johnsonii strain FDAARGOS_1580]
MAKAKTVYVCSNCGADSPKWIGKCPSCGEWNTYVEEIVAKEPAGKRVGTGFIRPDGAGPVRPVLLRDITSEEETRIDLGD
QELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLKGLRTLYVSGEESSRQLKLRADRIMHENPDCFILCETNLEQI
FVQTRNVQPDLLIIDSIQTIYTEVVESSPGSVSQVRECSAAILKYAKESGTPVLLIGHINKEGSIAGPKVLEHIVDTVLQ
FEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNHEGLSGVAIAAAIEGIRPFLIETQALVSSAV
YGTPQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISAVLSSSLDISIEPGICMCGEVGL
SGEIRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTSKCKMQIVQVRKVEEAFRQLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=621826 LK449_RS05545 WP_008148458.1 1342589..1343968(+) (radA) [Parabacteroides johnsonii strain FDAARGOS_1580]
ATGGCAAAAGCAAAAACAGTATATGTCTGCTCCAACTGTGGGGCTGATTCTCCGAAATGGATCGGGAAATGTCCTTCTTG
TGGGGAGTGGAACACGTATGTCGAGGAGATCGTGGCAAAAGAACCGGCCGGAAAGCGTGTCGGAACGGGATTTATCCGTC
CTGATGGAGCCGGTCCTGTGCGTCCTGTACTGCTTCGGGACATCACTTCCGAAGAAGAAACGCGCATCGACCTTGGTGAT
CAGGAGTTGAACCGCGTCCTCGGTGGTGGCCTGGTGAAAGGATCACTGGTCCTGATCGGCGGCGAACCGGGAATCGGTAA
GTCTACTCTTGTCCTGCAAACCGTCTTGGGACTGAAGGGACTCCGCACGCTTTATGTCTCCGGTGAAGAGAGCAGCCGCC
AGTTGAAACTTCGTGCCGACCGCATCATGCATGAGAACCCGGATTGCTTCATCCTCTGCGAAACCAATCTTGAACAGATA
TTTGTCCAGACCCGTAACGTTCAACCTGATCTCCTGATTATCGACTCGATACAAACGATTTATACGGAGGTGGTCGAATC
TTCTCCCGGAAGTGTATCGCAGGTACGTGAGTGTAGTGCTGCCATCCTGAAATATGCGAAAGAGAGTGGCACGCCCGTCC
TCCTGATCGGCCATATCAATAAGGAAGGAAGCATTGCCGGGCCGAAGGTTCTTGAACATATCGTTGACACTGTCCTTCAG
TTCGAGGGTGACCAGCATTATATGTACCGGATACTCAGGAGCATCAAGAACCGTTTCGGAAGTACGGCTGAATTAGGCAT
CTACGAGATGCGCCAAGACGGGCTTCGAGAAGTCAGTAACCCTTCCGAACTGCTATTGACGCAGAATCACGAAGGGCTGA
GCGGAGTGGCTATTGCGGCGGCGATCGAAGGGATCCGTCCTTTCCTGATCGAGACGCAGGCGCTGGTGAGTTCGGCCGTT
TACGGGACCCCACAGCGCAGCGCGACGGGGTTTGATCTCAGACGTATGAATATGTTGCTCGCGGTACTCGAAAAGCGTGC
TGGGTTCAAGTTGATACAGAAAGATGTCTTTTTGAATATTGCCGGCGGACTAAAGGTGAACGATCCGGCGATCGACTTGG
CGGTGATCAGTGCGGTTCTTTCTTCCAGTCTCGACATTTCAATCGAACCGGGTATCTGTATGTGCGGCGAGGTGGGACTT
TCGGGCGAGATCCGTCCGGTGAACCGCATCGAGCAGCGTATCCTGGAAGCGGAAAAATTAGGTTTCTCGCGCATTATCAT
CCCGCACAATAACCTGAAAGGCTTCGACACGTCCAAGTGCAAGATGCAAATTGTGCAAGTGCGCAAGGTAGAAGAGGCTT
TCCGGCAATTGTTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(345-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.41

100

0.516
  radA Streptococcus pneumoniae Rx1

48.373

100

0.486
  radA Streptococcus pneumoniae D39

48.373

100

0.486
  radA Streptococcus pneumoniae R6

48.373

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.373

100

0.486
  radA Streptococcus mitis SK321

48.373

100

0.486
  radA Streptococcus mitis NCTC 12261

48.373

100

0.486