Detailed information NTG0621777

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LK412_RS17535
• Genome accession: NZ_CP085970
• Coordinates: 3670043..3671146 (+)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain FDAARGOS_1542
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3665043..3676146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK412_RS17510 (LK412_17510)	-	3666920..3667306 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
LK412_RS17515 (LK412_17515)	-	3667314..3668447 (-)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
LK412_RS17520 (LK412_17520)	-	3668511..3668762 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LK412_RS17525 (LK412_17525)	coaD	3668817..3669326 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
LK412_RS17530 (LK412_17530)	rsmD	3669347..3669967 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LK412_RS17535 (LK412_17535)	pilA	3670043..3671146 (+)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
LK412_RS17540 (LK412_17540)	-	3671193..3672791 (-)	1599	Protein_3452	CYTH and CHAD domain-containing protein	-
LK412_RS17550 (LK412_17550)	phnE	3672974..3673795 (-)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
LK412_RS17555 (LK412_17555)	phnE	3673792..3674661 (-)	870	WP_023998122.1	phosphonate ABC transporter, permease protein PhnE	-
LK412_RS17560 (LK412_17560)	-	3674679..3675164 (-)	486	Protein_3455	phosphonate ABC transporter ATP-binding protein	-
LK412_RS17565 (LK412_17565)	-	3675158..3676108 (-)	951	WP_005013747.1	IS481-like element IS481 family transposase	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=621777 LK412_RS17535 WP_023853086.1 3670043..3671146(+) (pilA) [Bordetella pertussis strain FDAARGOS_1542]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=621777 LK412_RS17535 WP_023853086.1 3670043..3671146(+) (pilA) [Bordetella pertussis strain FDAARGOS_1542]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507