Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   LK402_RS02050 Genome accession   NZ_CP085965
Coordinates   413194..413505 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_1546     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408194..418505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK402_RS02030 (LK402_02030) ctsE 409063..410622 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  LK402_RS02035 (LK402_02035) ctsX 410612..411199 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  LK402_RS02040 (LK402_02040) ctsP 411203..411811 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  LK402_RS02045 (LK402_02045) ctsD 411804..413216 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LK402_RS02050 (LK402_02050) ctsR 413194..413505 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  LK402_RS02055 (LK402_02055) nifJ 413529..417089 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  LK402_RS02060 (LK402_02060) - 417182..417823 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=621726 LK402_RS02050 WP_002862131.1 413194..413505(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_1546]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=621726 LK402_RS02050 WP_002862131.1 413194..413505(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_1546]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99