Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   LK402_RS01790 Genome accession   NZ_CP085965
Coordinates   359482..360666 (-) Length   394 a.a.
NCBI ID   WP_012006763.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_1546     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 354482..365666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK402_RS01765 (LK402_01765) fliL 355630..356166 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  LK402_RS01770 (LK402_01770) acpS 356166..356513 (+) 348 WP_002866684.1 holo-ACP synthase -
  LK402_RS01775 (LK402_01775) - 356514..356933 (-) 420 WP_002862076.1 hypothetical protein -
  LK402_RS01780 (LK402_01780) - 356930..358291 (-) 1362 WP_002866683.1 cytochrome P450 -
  LK402_RS01785 (LK402_01785) - 358288..359409 (-) 1122 WP_002866682.1 hypothetical protein -
  LK402_RS01790 (LK402_01790) kpsS 359482..360666 (-) 1185 WP_012006763.1 capsule polysaccharide modification protein KpsS Regulator
  LK402_RS01795 (LK402_01795) - 360663..361760 (-) 1098 Protein_353 capsular polysaccharide biosynthesis protein -
  LK402_RS01800 (LK402_01800) - 361960..363015 (-) 1056 WP_012006764.1 phosphonoacetaldehyde reductase -
  LK402_RS01805 (LK402_01805) aepY 363008..364204 (-) 1197 WP_012006765.1 phosphonopyruvate decarboxylase -
  LK402_RS08390 aepX 364204..365035 (-) 832 Protein_356 phosphoenolpyruvate mutase -
  LK402_RS08395 - 365279..365635 (-) 357 Protein_357 adenylyltransferase/cytidyltransferase family protein -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46916.64 Da        Isoelectric Point: 9.8632

>NTDB_id=621720 LK402_RS01790 WP_012006763.1 359482..360666(-) (kpsS) [Campylobacter jejuni strain FDAARGOS_1546]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELEIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTKESIKEILGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEQTILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=621720 LK402_RS01790 WP_012006763.1 359482..360666(-) (kpsS) [Campylobacter jejuni strain FDAARGOS_1546]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAATGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACAAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGGGATTTTTTTCAAAGTAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGAAATTGAAGT
ATGGATTTTTGAAGAAGGGTATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAGGATATTTTTACCAAAGAAAGCATAAAAGAAATTCTAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGTAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGCAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGCGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAGAAGCTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCTAATCCTATTTTGGTATGTAATTTTAAGA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTACAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

96.954

100

0.97