Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | LK402_RS00600 | Genome accession | NZ_CP085965 |
| Coordinates | 117336..118286 (+) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain FDAARGOS_1546 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 95978..133206 | 117336..118286 | within | 0 |
Gene organization within MGE regions
Location: 95978..133206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK402_RS00485 (LK402_00485) | pglI | 95978..96907 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| LK402_RS00490 (LK402_00490) | pglH | 96900..97979 (-) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| LK402_RS00495 (LK402_00495) | pglK | 97976..99670 (-) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| LK402_RS00500 (LK402_00500) | galE | 99664..100650 (-) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| LK402_RS00505 (LK402_00505) | - | 100709..101503 (-) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| LK402_RS00510 (LK402_00510) | waaC | 101569..102597 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| LK402_RS00515 (LK402_00515) | htrB | 102587..103465 (+) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| LK402_RS00520 (LK402_00520) | - | 103462..104163 (+) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| LK402_RS00525 (LK402_00525) | rfbA | 104174..105052 (+) | 879 | WP_002866148.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| LK402_RS00530 (LK402_00530) | rfbB | 105052..106083 (+) | 1032 | WP_002866149.1 | dTDP-glucose 4,6-dehydratase | - |
| LK402_RS00535 (LK402_00535) | wlaRA | 106086..106535 (+) | 450 | WP_052776004.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| LK402_RS00540 (LK402_00540) | wlaRB | 106532..106939 (+) | 408 | WP_002866152.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| LK402_RS00545 (LK402_00545) | - | 106929..107363 (+) | 435 | WP_032603537.1 | N-acetyltransferase | - |
| LK402_RS00550 (LK402_00550) | wlaRD | 107393..108211 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| LK402_RS00555 (LK402_00555) | - | 108230..109294 (+) | 1065 | WP_002866155.1 | glycosyltransferase family 2 protein | - |
| LK402_RS00560 (LK402_00560) | - | 109306..110358 (+) | 1053 | WP_041176357.1 | glycosyltransferase family 2 protein | - |
| LK402_RS00565 (LK402_00565) | wlaRG | 110324..111409 (+) | 1086 | WP_032603539.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| LK402_RS00570 (LK402_00570) | - | 111443..112696 (-) | 1254 | WP_002866158.1 | DUF2972 domain-containing protein | - |
| LK402_RS00575 (LK402_00575) | - | 112693..113595 (-) | 903 | WP_002866159.1 | hypothetical protein | - |
| LK402_RS00580 (LK402_00580) | - | 113778..114551 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| LK402_RS00585 (LK402_00585) | wlaTB | 114544..115500 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| LK402_RS00590 (LK402_00590) | wlaTC | 115497..116456 (+) | 960 | WP_012006735.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| LK402_RS00595 (LK402_00595) | - | 116459..117277 (-) | 819 | WP_002866163.1 | glycosyltransferase family 2 protein | - |
| LK402_RS00600 (LK402_00600) | waaF | 117336..118286 (+) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| LK402_RS00605 (LK402_00605) | - | 118338..119837 (+) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| LK402_RS00610 (LK402_00610) | - | 119985..120962 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| LK402_RS00615 (LK402_00615) | gmhA | 120966..121526 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| LK402_RS00620 (LK402_00620) | rfaE1 | 121523..122908 (-) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| LK402_RS00625 (LK402_00625) | rfaD | 122901..123854 (-) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| LK402_RS00630 (LK402_00630) | gmhB | 123855..124415 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| LK402_RS00635 (LK402_00635) | - | 124497..124799 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| LK402_RS00640 (LK402_00640) | ccoS | 124822..125028 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| LK402_RS00645 (LK402_00645) | - | 125025..127382 (-) | 2358 | WP_072238644.1 | heavy metal translocating P-type ATPase | - |
| LK402_RS00650 (LK402_00650) | rho | 127492..128790 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| LK402_RS00655 (LK402_00655) | dnaX | 128794..130323 (+) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
| LK402_RS00660 (LK402_00660) | - | 130320..130841 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| LK402_RS00665 (LK402_00665) | copA | 130913..133012 (-) | 2100 | WP_002866176.1 | copper-translocating P-type ATPase CopA | - |
| LK402_RS00670 (LK402_00670) | - | 133012..133206 (-) | 195 | WP_002870481.1 | heavy-metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=621713 LK402_RS00600 WP_002866164.1 117336..118286(+) (waaF) [Campylobacter jejuni strain FDAARGOS_1546]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=621713 LK402_RS00600 WP_002866164.1 117336..118286(+) (waaF) [Campylobacter jejuni strain FDAARGOS_1546]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |