Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   LK402_RS00235 Genome accession   NZ_CP085965
Coordinates   46112..46414 (+) Length   100 a.a.
NCBI ID   WP_002877750.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_1546     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 41112..51414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK402_RS00210 (LK402_00210) rpsR 41474..41734 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  LK402_RS00215 (LK402_00215) lon 41795..44170 (-) 2376 WP_012006726.1 endopeptidase La -
  LK402_RS00220 (LK402_00220) - 44187..44834 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  LK402_RS00225 (LK402_00225) fliW 44995..45384 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  LK402_RS00230 (LK402_00230) proC 45384..46115 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  LK402_RS00235 (LK402_00235) ctsT 46112..46414 (+) 303 WP_002877750.1 hypothetical protein Machinery gene
  LK402_RS00240 (LK402_00240) - 46411..47073 (+) 663 WP_012006728.1 hypothetical protein -
  LK402_RS00245 (LK402_00245) - 47070..47522 (+) 453 WP_002869049.1 hypothetical protein -
  LK402_RS00250 (LK402_00250) hemD 47519..48148 (-) 630 WP_002856298.1 uroporphyrinogen-III synthase -
  LK402_RS00255 (LK402_00255) thiE 48126..48758 (-) 633 WP_002856400.1 thiamine phosphate synthase -
  LK402_RS00260 (LK402_00260) thiD 48748..49560 (-) 813 WP_012006730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LK402_RS00265 (LK402_00265) - 49557..50243 (-) 687 WP_002869046.1 3-methyladenine DNA glycosylase -
  LK402_RS00270 (LK402_00270) - 50240..51001 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12138.20 Da        Isoelectric Point: 7.0039

>NTDB_id=621711 LK402_RS00235 WP_002877750.1 46112..46414(+) (ctsT) [Campylobacter jejuni strain FDAARGOS_1546]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=621711 LK402_RS00235 WP_002877750.1 46112..46414(+) (ctsT) [Campylobacter jejuni strain FDAARGOS_1546]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98