Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LK410_RS11030 Genome accession   NZ_CP085963
Coordinates   2260082..2260474 (-) Length   130 a.a.
NCBI ID   WP_005871972.1    Uniprot ID   C8PJC5
Organism   Campylobacter gracilis strain FDAARGOS_1548     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2255082..2265474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK410_RS11015 (LK410_11015) - 2255765..2257147 (+) 1383 WP_005871958.1 FAD-linked oxidase C-terminal domain-containing protein -
  LK410_RS11020 (LK410_11020) - 2257788..2258474 (-) 687 WP_050346315.1 tetratricopeptide repeat protein -
  LK410_RS11025 (LK410_11025) - 2259251..2259619 (-) 369 WP_005871970.1 EthD domain-containing protein -
  LK410_RS11030 (LK410_11030) dprB 2260082..2260474 (-) 393 WP_005871972.1 Holliday junction resolvase RuvX Machinery gene
  LK410_RS11035 (LK410_11035) - 2260601..2260813 (-) 213 WP_143297846.1 hypothetical protein -
  LK410_RS11040 (LK410_11040) - 2261313..2262101 (-) 789 WP_005871976.1 DNA-processing protein DprA -
  LK410_RS11045 (LK410_11045) - 2262085..2263290 (-) 1206 WP_005871977.1 divergent polysaccharide deacetylase family protein -
  LK410_RS11050 (LK410_11050) ilvC 2263304..2264326 (-) 1023 WP_005871978.1 ketol-acid reductoisomerase -
  LK410_RS11055 (LK410_11055) proC 2264465..2265421 (+) 957 WP_005871979.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14033.13 Da        Isoelectric Point: 6.9589

>NTDB_id=621695 LK410_RS11030 WP_005871972.1 2260082..2260474(-) (dprB) [Campylobacter gracilis strain FDAARGOS_1548]
MIVAIDLGLKRIGVAAAPDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRGGASEEEMSRRIRHFASLLDF
DGEIKFQDESFSSAEAAEFASKCAKGGGKDPRFDSIAATIILQRFLASMG

Nucleotide


Download         Length: 393 bp        

>NTDB_id=621695 LK410_RS11030 WP_005871972.1 2260082..2260474(-) (dprB) [Campylobacter gracilis strain FDAARGOS_1548]
TTGATAGTTGCGATCGATCTTGGGCTTAAGCGTATCGGCGTGGCAGCGGCACCGGATGATAAGACGCCGCTTCCGTGCGA
GCCGATCCTGCGCAAAAACCGCACCCAAGCCGCGCGCGAGCTAAGCGAACTGCTGCGCGAAAAGGGTGCCAGCGTGCTAG
TGCTGGGCGTGCCGCGCGGCGGGGCGAGCGAGGAGGAGATGAGCAGGCGCATACGCCACTTCGCCTCGCTGCTGGATTTT
GACGGCGAGATAAAATTTCAAGATGAGAGCTTTTCGAGCGCCGAAGCGGCGGAGTTTGCGAGTAAATGCGCTAAGGGCGG
CGGCAAGGATCCGCGCTTTGATAGCATCGCCGCGACGATAATTTTGCAGAGGTTTTTGGCGAGCATGGGCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8PJC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.837

99.231

0.485