Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LK404_RS02760 Genome accession   NZ_CP085957
Coordinates   554511..556271 (-) Length   586 a.a.
NCBI ID   WP_227905845.1    Uniprot ID   -
Organism   Finegoldia magna strain FDAARGOS_1556     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 549511..561271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK404_RS02740 (LK404_02740) rlmD 549976..551190 (-) 1215 WP_227905838.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LK404_RS02745 (LK404_02745) - 551372..551833 (+) 462 WP_227905839.1 hypothetical protein -
  LK404_RS02750 (LK404_02750) - 551937..552674 (+) 738 WP_227905841.1 DUF6544 family protein -
  LK404_RS02755 (LK404_02755) rcrQ 552722..554518 (-) 1797 WP_227905843.1 ABC transporter ATP-binding protein Regulator
  LK404_RS02760 (LK404_02760) rcrP 554511..556271 (-) 1761 WP_227905845.1 ABC transporter ATP-binding protein Regulator
  LK404_RS02765 (LK404_02765) - 556246..556722 (-) 477 WP_154271862.1 MarR family winged helix-turn-helix transcriptional regulator -
  LK404_RS02770 (LK404_02770) thiC 556879..558180 (-) 1302 WP_094204200.1 phosphomethylpyrimidine synthase ThiC -
  LK404_RS02775 (LK404_02775) - 558361..559275 (-) 915 WP_227905846.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  LK404_RS02780 (LK404_02780) moaA 559277..560224 (-) 948 WP_227905848.1 GTP 3',8-cyclase MoaA -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 66384.34 Da        Isoelectric Point: 5.2204

>NTDB_id=621645 LK404_RS02760 WP_227905845.1 554511..556271(-) (rcrP) [Finegoldia magna strain FDAARGOS_1556]
MIVLIKIIRYLNKKQWMQILLSFVFIVTQVYLDLKIPDYMSKITMYVESPGHSVSDIIGEGKWMLLCAFGSLISAIIVGF
LASKVSASFSKDLRSRIFSKVESFSMKEINEFSTASLITRSTNDITQIQMVIVIGLQILIKAPIMAVWAITKIYNKGFEW
TMATAVTVLILIIFVAILMILVMPKFRIMQTLTDNINRILRENLTGLAVIRAYNSEEFREGKFEEANVELTNTQLFTSRA
MSTMFPAINLGMSVLTLVIYFIGAGLINAANMMDKYVLFSNMVVFSSYAMQVIMSFMMMSMIFIMIPRAQISANRINEVL
DTELSIKDGDVDSSNEDYEYEIEFDNVSFKYTDSEQYILKDIDFKVKKGEKVAIIGSTGSGKSTILNLLLRFYDATEGVV
KIQGIDIRKYKLKFLYEKIGAVFQKSFLFKGNVKSNISFSEDGMDNEKVEQAADTSQSMEFIDKFDEKFDHEIAQLGKNV
SGGQKQRLSIARAIYKKPDIYLFDDSFSALDFKTDSELRHQLREKSPDATTIIVAQRVGSIMDSDQIIVLENGEIAGIGK
HKDLLKNCEVYSEIAYSQLTEEELNA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=621645 LK404_RS02760 WP_227905845.1 554511..556271(-) (rcrP) [Finegoldia magna strain FDAARGOS_1556]
ATGATAGTTTTGATAAAAATAATTAGATATTTGAATAAAAAACAATGGATGCAGATACTTTTGAGTTTTGTGTTTATCGT
TACTCAAGTGTATTTGGATTTGAAAATTCCGGATTATATGTCGAAAATCACGATGTATGTAGAAAGTCCGGGTCACAGTG
TAAGTGATATTATCGGCGAAGGAAAATGGATGCTTTTGTGTGCATTCGGATCTTTGATTTCAGCAATTATCGTAGGATTT
TTGGCGTCGAAGGTATCGGCGTCATTTTCCAAAGATTTGAGATCCAGAATATTTTCCAAGGTGGAAAGTTTTTCCATGAA
AGAAATCAACGAATTTTCCACAGCAAGTTTGATAACTAGATCTACGAACGATATTACTCAAATTCAAATGGTAATAGTGA
TAGGATTACAAATTTTGATTAAAGCGCCAATAATGGCTGTGTGGGCTATCACGAAAATCTACAACAAGGGATTTGAATGG
ACAATGGCGACTGCTGTCACTGTGTTGATTTTAATTATTTTCGTTGCAATTCTAATGATTTTGGTTATGCCGAAATTCAG
AATAATGCAAACTTTAACAGATAATATCAACAGGATTTTGCGTGAAAACTTGACAGGACTTGCAGTTATAAGAGCTTATA
ATTCTGAAGAATTTAGAGAAGGAAAGTTTGAAGAAGCAAATGTTGAATTGACAAATACTCAATTATTTACAAGTCGTGCA
ATGAGTACGATGTTTCCTGCGATTAATTTGGGGATGTCTGTTCTAACTCTTGTGATTTATTTCATAGGGGCAGGACTCAT
AAATGCTGCGAATATGATGGACAAATACGTTTTGTTCTCAAATATGGTTGTGTTCAGTTCGTATGCAATGCAAGTTATCA
TGTCATTTATGATGATGAGTATGATATTCATAATGATTCCAAGAGCGCAAATCTCTGCAAATCGTATCAACGAAGTGTTG
GATACAGAGCTTTCCATAAAAGATGGTGATGTTGATAGCTCAAATGAAGATTACGAATATGAAATTGAGTTTGACAATGT
ATCTTTCAAATACACTGATTCTGAGCAATATATTTTAAAAGATATTGATTTTAAGGTGAAAAAAGGAGAAAAGGTAGCTA
TAATAGGTTCCACAGGCTCTGGCAAAAGCACCATATTGAATTTGCTTTTGAGATTTTATGATGCAACTGAAGGGGTTGTG
AAAATCCAAGGAATCGACATTAGAAAGTATAAGCTTAAATTTTTGTACGAAAAAATCGGCGCCGTTTTCCAAAAATCATT
CCTATTCAAAGGAAATGTAAAATCGAACATTTCATTTTCAGAAGATGGTATGGATAATGAAAAAGTAGAACAAGCAGCAG
ATACTTCGCAATCTATGGAGTTTATCGACAAATTTGACGAAAAATTTGACCACGAAATCGCACAATTAGGTAAGAATGTT
TCTGGGGGACAAAAACAAAGATTGTCCATAGCCAGAGCAATCTACAAAAAACCAGATATTTATCTGTTCGACGACAGTTT
CTCTGCACTTGATTTCAAAACAGATAGCGAACTTAGACATCAATTGAGAGAAAAAAGCCCCGATGCTACAACTATTATTG
TCGCTCAAAGGGTGGGTTCGATAATGGATTCAGATCAAATAATCGTACTTGAAAACGGAGAAATAGCAGGAATAGGTAAA
CACAAAGATTTATTGAAAAATTGTGAAGTGTACAGTGAAATAGCCTACTCGCAATTAACAGAGGAGGAATTAAATGCCTA
G

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(21-296)

ABC transporter (ABC_tran)

(359-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.651

100

0.485