Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LK404_RS02755 Genome accession   NZ_CP085957
Coordinates   552722..554518 (-) Length   598 a.a.
NCBI ID   WP_227905843.1    Uniprot ID   -
Organism   Finegoldia magna strain FDAARGOS_1556     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 547722..559518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK404_RS02730 (LK404_02730) - 548148..548975 (-) 828 WP_227905835.1 ATP-binding protein -
  LK404_RS02735 (LK404_02735) - 548972..549745 (-) 774 WP_227905836.1 replication initiator protein A -
  LK404_RS02740 (LK404_02740) rlmD 549976..551190 (-) 1215 WP_227905838.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LK404_RS02745 (LK404_02745) - 551372..551833 (+) 462 WP_227905839.1 hypothetical protein -
  LK404_RS02750 (LK404_02750) - 551937..552674 (+) 738 WP_227905841.1 DUF6544 family protein -
  LK404_RS02755 (LK404_02755) rcrQ 552722..554518 (-) 1797 WP_227905843.1 ABC transporter ATP-binding protein Regulator
  LK404_RS02760 (LK404_02760) rcrP 554511..556271 (-) 1761 WP_227905845.1 ABC transporter ATP-binding protein Regulator
  LK404_RS02765 (LK404_02765) - 556246..556722 (-) 477 WP_154271862.1 MarR family winged helix-turn-helix transcriptional regulator -
  LK404_RS02770 (LK404_02770) thiC 556879..558180 (-) 1302 WP_094204200.1 phosphomethylpyrimidine synthase ThiC -
  LK404_RS02775 (LK404_02775) - 558361..559275 (-) 915 WP_227905846.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67091.13 Da        Isoelectric Point: 7.3470

>NTDB_id=621644 LK404_RS02755 WP_227905843.1 552722..554518(-) (rcrQ) [Finegoldia magna strain FDAARGOS_1556]
MPRQTVNEKPKKFKKTLKEMAGYLKPYFPLILIAVVASVIATILQIIGPDKLKLITDEITKGLPKIVKGKPVVTAIDMDS
VKSITLMLLIFYLSSLVLNLLQRFIMADVTQKISKSFREEIAKKINRLPFSYFDNTTFGDILSRVTNDVDTISQSLNQSV
GALLTSIVMLIGTVVMMIYNSGILTITTILSSLVGFVFITIIMKKSQKYFKEQQQNLGDINGQIEEVYTGHNVIKAYNAG
ARAVDEFEQTNTKLYTSAWKSQFLSGLMMPIMQFAGNFSYVMVCIVGGALAINGKISFGVIVAFMIYVRLFTNPLSDIAQ
SFNTLQRAAAAGERVFEFLNEKELEEENVTEKLDRAKGKVEFKNVRFGYDPEKIIIKDFSVKVNPGEKIAIVGPTGAGKT
TIVNLLMRFYEINDGQILIDGIDTKNLSRENLRDQFCMVLQDSWVFEASVRENITFGEKDITDEELIDVCKRVNLDHFIR
TLPNGYDTILNDKQSLSQGQLQLLTIARAMVSHAPMLILDEATSSVDTRTEIIVQDAMDELAKGRTSFVIAHRLSTIKNA
DLILVMKDGDIVEKGKHDELLARDGFYAQLYNAQFERK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=621644 LK404_RS02755 WP_227905843.1 552722..554518(-) (rcrQ) [Finegoldia magna strain FDAARGOS_1556]
ATGCCTAGACAAACTGTAAATGAAAAACCGAAAAAATTCAAAAAAACATTAAAAGAAATGGCAGGGTATTTGAAGCCTTA
TTTTCCATTGATATTAATAGCAGTTGTGGCAAGCGTAATAGCGACGATTTTGCAAATAATTGGACCAGATAAGTTAAAAC
TAATCACAGATGAAATCACAAAAGGACTTCCTAAAATAGTCAAAGGAAAACCCGTTGTAACTGCGATTGACATGGATAGC
GTAAAATCAATAACGTTGATGCTGTTGATATTTTATCTATCTTCACTTGTGTTGAATTTGTTGCAAAGATTTATCATGGC
AGATGTCACGCAGAAAATCTCCAAATCATTCAGAGAAGAGATAGCAAAAAAAATCAATAGATTGCCATTTAGCTATTTTG
ACAACACAACTTTTGGAGACATTCTAAGTAGAGTAACAAACGACGTTGACACAATCAGTCAAAGTTTGAATCAATCTGTT
GGAGCATTGTTGACAAGTATCGTAATGCTTATTGGAACTGTAGTTATGATGATTTACAATTCGGGAATATTGACGATAAC
GACGATTTTGTCATCGCTTGTGGGATTTGTGTTCATTACAATAATAATGAAAAAATCACAAAAATATTTCAAAGAACAAC
AACAAAACTTGGGTGATATCAACGGACAAATCGAAGAAGTGTACACTGGTCACAACGTAATCAAAGCTTACAACGCAGGA
GCAAGAGCCGTAGATGAATTTGAACAAACAAACACGAAACTCTACACTAGTGCATGGAAATCACAATTTTTGTCAGGACT
TATGATGCCTATCATGCAATTTGCTGGAAACTTCTCCTACGTAATGGTCTGCATAGTCGGTGGAGCATTGGCAATCAACG
GCAAAATATCATTCGGGGTTATAGTAGCTTTTATGATTTACGTTAGACTATTCACAAATCCTCTATCAGATATCGCACAA
AGTTTCAACACTTTACAAAGAGCTGCAGCGGCAGGGGAGAGAGTGTTCGAGTTTTTGAACGAAAAAGAATTAGAAGAAGA
AAACGTAACTGAAAAACTCGACAGAGCAAAAGGCAAAGTTGAATTCAAAAACGTTAGGTTTGGATATGATCCTGAAAAAA
TCATCATCAAAGATTTCAGCGTAAAAGTAAATCCAGGAGAAAAAATAGCCATCGTTGGGCCAACTGGAGCCGGAAAGACT
ACAATCGTAAATCTATTAATGAGATTTTACGAAATAAACGACGGACAAATATTGATAGACGGAATTGATACGAAAAACTT
ATCCAGAGAGAATTTGAGAGACCAATTCTGTATGGTACTTCAAGATTCGTGGGTATTCGAAGCAAGTGTCAGAGAAAACA
TAACATTCGGAGAAAAAGATATAACTGACGAAGAATTGATAGACGTGTGCAAACGCGTAAACTTGGATCACTTTATCAGA
ACACTTCCAAATGGATATGACACTATTTTAAACGACAAACAATCATTGTCTCAAGGACAACTTCAACTACTCACAATCGC
ACGTGCAATGGTAAGTCACGCGCCAATGTTGATACTAGATGAAGCTACAAGCTCCGTGGATACAAGAACTGAAATAATCG
TTCAAGATGCAATGGATGAACTCGCAAAAGGAAGAACATCATTTGTAATCGCGCACAGATTATCCACAATCAAAAACGCA
GATTTGATACTTGTAATGAAAGACGGAGACATCGTAGAAAAAGGAAAACACGACGAATTATTGGCACGAGACGGATTCTA
CGCACAATTATATAACGCGCAATTTGAAAGAAAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(31-315)

ABC transporter (ABC_tran)

(377-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.385

97.826

0.542