Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LK415_RS06330 Genome accession   NZ_CP085955
Coordinates   1297690..1299486 (+) Length   598 a.a.
NCBI ID   WP_012291081.1    Uniprot ID   B0S3A3
Organism   Finegoldia magna strain FDAARGOS_1557     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292690..1304486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK415_RS06310 (LK415_06310) - 1292925..1293839 (+) 915 WP_002840694.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  LK415_RS06315 (LK415_06315) thiC 1294020..1295321 (+) 1302 WP_012291083.1 phosphomethylpyrimidine synthase ThiC -
  LK415_RS06320 (LK415_06320) - 1295486..1295962 (+) 477 WP_002836890.1 MarR family winged helix-turn-helix transcriptional regulator -
  LK415_RS06325 (LK415_06325) rcrP 1295937..1297697 (+) 1761 WP_012291082.1 ABC transporter ATP-binding protein Regulator
  LK415_RS06330 (LK415_06330) rcrQ 1297690..1299486 (+) 1797 WP_012291081.1 ABC transporter ATP-binding protein Regulator
  LK415_RS06335 (LK415_06335) rlmD 1299578..1300789 (+) 1212 WP_012291080.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LK415_RS06340 (LK415_06340) - 1301110..1301697 (+) 588 WP_012291079.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  LK415_RS06345 (LK415_06345) - 1301694..1302536 (+) 843 Protein_1212 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  LK415_RS06350 (LK415_06350) - 1302984..1303988 (+) 1005 WP_041250668.1 DUF4297 domain-containing protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67146.29 Da        Isoelectric Point: 7.0492

>NTDB_id=621640 LK415_RS06330 WP_012291081.1 1297690..1299486(+) (rcrQ) [Finegoldia magna strain FDAARGOS_1557]
MPRQAVNEKPKKFKKTLKEMARYLKPYFPLILIAIVASVIATILQIIGPDKLKLITDEITKGLPKMVKGKPVMAAIDMDN
VKSITMMLVIFYGSSLLLNLLQRFIMADVTQKISKSFREKIANKVNKLPFSYFDNTTFGDILSRVTNDVDTISQSLNQSV
GSLLTSVVMLVGTVVMMIYNSGILTVTTILSSLVGFVVIIIIMKKSQKHFKAQQENLGDINGQIEEVYTGHNVIKAYNAG
EMMIDEFEETNKKLYTSAWKSQFLSGLMMPVMQFAGNFSYVMVCIVGGALAINGKISFGVIVAFMIYVRLFTNPLSDIAQ
SFNTLQRAAAAGERVFEFLNEKELEEENVTEKLDRAKGEVEFKDVRFGYNPDKIIIKDFSVKVNPGEKIAIVGPTGAGKT
TIVNLLMRFYEINDGQILVDGIDTKKLSRDNLRDQFCMVLQDSWVFEASVRENITFGEENITDEELIDVCKRVNLDHFIR
TLPQGYDTILNDKQSLSQGQLQLLTIARAMVSHAPMLILDEATSSVDTRTEIIVQDAMDELAKGRTSFVIAHRLSTIKNA
DLILVMKDGDIVEKGKHDELLKRDGFYAQLYNAQFERK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=621640 LK415_RS06330 WP_012291081.1 1297690..1299486(+) (rcrQ) [Finegoldia magna strain FDAARGOS_1557]
ATGCCTAGACAAGCTGTAAATGAAAAACCGAAAAAATTCAAAAAAACATTAAAAGAAATGGCAAGGTATTTGAAACCTTA
CTTCCCATTGATATTAATAGCAATTGTAGCAAGCGTAATCGCAACGATATTGCAAATAATTGGACCAGATAAATTGAAAC
TAATAACAGACGAAATCACCAAAGGACTTCCTAAAATGGTAAAAGGAAAGCCTGTGATGGCTGCAATTGACATGGATAAT
GTAAAATCAATCACGATGATGCTTGTTATATTTTACGGATCATCTTTGTTGTTGAATTTGCTTCAAAGATTTATCATGGC
AGATGTTACACAAAAAATCTCCAAATCATTCCGAGAAAAAATCGCAAATAAAGTCAATAAATTACCATTTAGTTATTTCG
ACAACACAACTTTTGGAGACATTCTAAGTAGGGTAACAAACGACGTCGACACAATCAGCCAAAGTTTGAACCAATCTGTT
GGAAGTTTGCTGACAAGTGTTGTGATGTTAGTAGGAACCGTAGTAATGATGATTTACAACTCGGGAATTTTGACTGTAAC
GACGATTTTGTCATCGCTTGTGGGATTTGTGGTTATAATAATAATTATGAAAAAATCACAAAAACATTTCAAAGCCCAAC
AAGAAAACTTGGGAGACATTAACGGCCAAATCGAAGAAGTCTACACTGGTCACAACGTCATAAAGGCCTACAATGCTGGT
GAAATGATGATTGATGAATTCGAAGAAACTAACAAGAAACTTTACACAAGTGCTTGGAAATCGCAATTTCTGTCCGGACT
TATGATGCCTGTAATGCAATTTGCAGGAAACTTTTCATACGTAATGGTCTGCATAGTCGGAGGAGCATTGGCGATTAATG
GCAAAATATCATTCGGAGTAATTGTGGCGTTTATGATATACGTGAGACTATTTACCAATCCATTATCAGACATTGCACAA
AGCTTCAACACTTTGCAAAGAGCTGCAGCGGCAGGGGAGAGAGTGTTCGAATTTTTGAACGAAAAAGAATTAGAAGAAGA
AAACGTAACTGAAAAACTCGACAGAGCAAAAGGCGAAGTCGAATTTAAAGACGTTAGATTTGGATATAACCCAGACAAAA
TCATCATCAAAGATTTCAGCGTCAAAGTAAATCCAGGAGAGAAAATCGCCATCGTTGGCCCAACTGGAGCAGGCAAGACG
ACAATTGTAAATCTATTAATGAGATTTTACGAAATAAACGACGGACAAATATTGGTAGACGGAATTGATACGAAAAAATT
ATCCAGAGACAATTTGAGAGACCAATTCTGCATGGTGCTTCAAGATTCGTGGGTTTTCGAAGCGAGTGTCAGAGAAAACA
TAACATTTGGAGAAGAAAATATAACTGACGAAGAATTGATTGATGTGTGCAAACGAGTAAACTTAGATCATTTTATCAGA
ACACTTCCACAAGGATACGACACGATTTTAAACGACAAGCAATCATTGTCGCAAGGACAACTTCAACTACTCACAATAGC
ACGTGCGATGGTAAGTCACGCGCCAATGTTGATACTAGATGAAGCCACAAGTTCCGTGGATACGAGAACTGAAATAATCG
TTCAAGATGCAATGGACGAACTCGCAAAAGGAAGAACATCATTTGTAATCGCACACAGATTATCCACAATCAAAAACGCG
GATTTGATACTTGTAATGAAAGACGGAGACATCGTAGAAAAAGGAAAACATGACGAATTATTGAAACGTGACGGATTCTA
CGCACAATTATACAACGCGCAATTTGAAAGAAAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(31-315)

ABC transporter (ABC_tran)

(377-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0S3A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.359

97.826

0.532