Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LK415_RS06325 Genome accession   NZ_CP085955
Coordinates   1295937..1297697 (+) Length   586 a.a.
NCBI ID   WP_012291082.1    Uniprot ID   -
Organism   Finegoldia magna strain FDAARGOS_1557     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290937..1302697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK415_RS06305 (LK415_06305) moaA 1291976..1292923 (+) 948 WP_012291085.1 GTP 3',8-cyclase MoaA -
  LK415_RS06310 (LK415_06310) - 1292925..1293839 (+) 915 WP_002840694.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  LK415_RS06315 (LK415_06315) thiC 1294020..1295321 (+) 1302 WP_012291083.1 phosphomethylpyrimidine synthase ThiC -
  LK415_RS06320 (LK415_06320) - 1295486..1295962 (+) 477 WP_002836890.1 MarR family winged helix-turn-helix transcriptional regulator -
  LK415_RS06325 (LK415_06325) rcrP 1295937..1297697 (+) 1761 WP_012291082.1 ABC transporter ATP-binding protein Regulator
  LK415_RS06330 (LK415_06330) rcrQ 1297690..1299486 (+) 1797 WP_012291081.1 ABC transporter ATP-binding protein Regulator
  LK415_RS06335 (LK415_06335) rlmD 1299578..1300789 (+) 1212 WP_012291080.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LK415_RS06340 (LK415_06340) - 1301110..1301697 (+) 588 WP_012291079.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  LK415_RS06345 (LK415_06345) - 1301694..1302536 (+) 843 Protein_1212 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 66605.67 Da        Isoelectric Point: 5.2099

>NTDB_id=621639 LK415_RS06325 WP_012291082.1 1295937..1297697(+) (rcrP) [Finegoldia magna strain FDAARGOS_1557]
MIILIKIFRYLNKKQWIQILLSLVFIVTQVFLDLKIPDYMSKITMYVESPGHTVSDIVGEGKWMLLCAFGSLLSAIIVGY
LASKISASFSKNLRSRIFSKVESFSMKEINEFSTASLITRSTNDITQIQMVIVIGLQILIKAPIMAVWAITKIYNKGFEW
TMATAVTVLVLIVFVAILMVMVMPKFRMMQTLTDNINRILRENLTGLAVIRAYNSEDYREGKFDEANIDLTRTQLFTSRA
MSMLFPMINFSMSMLTLVIYFIGAGLINAAQMMDKYVLFSNMVVFSSYAMQVIMSFMMMSMIFIMVPRAEISAKRINEVL
DTELSIKDGNLDSSNEDYEYEIEFDDVSFKYTDSEQYILQNIDFKVKKGEKVAIIGSTGSGKSTILNLLLRFYDATEGVV
KIQGVDIKQYKLKFLYEKIAAVLQKSFLFKGDIKSNISFGDEDTDTKMVEEAADTSQSIEFIDKFDDKYDHEIAQLGKNV
SGGQKQRLSIARAIYRKPDIFLFDDSFSALDFKTDSELRHQLKENNPDSTTIVVAQRVGSIMDSDQIIVLENGQIVGIGK
HKDLLKNCEVYKEIAYSQLTEEELNA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=621639 LK415_RS06325 WP_012291082.1 1295937..1297697(+) (rcrP) [Finegoldia magna strain FDAARGOS_1557]
ATGATAATTTTGATAAAAATATTTAGATATTTGAACAAAAAACAATGGATTCAAATTCTTTTGAGTTTGGTGTTTATCGT
AACTCAAGTGTTTTTGGATTTGAAAATTCCAGATTATATGTCGAAAATTACGATGTATGTGGAAAGTCCGGGTCACACTG
TAAGTGATATTGTTGGAGAGGGCAAATGGATGCTGTTGTGTGCATTTGGTTCTCTTTTATCAGCGATAATTGTAGGATAT
TTGGCATCGAAAATTTCGGCGTCATTTTCCAAAAATTTGAGGTCTAGAATATTTTCCAAGGTGGAAAGTTTCTCGATGAA
AGAAATCAACGAGTTTTCGACAGCAAGCTTGATAACTAGATCTACAAATGATATTACTCAAATTCAAATGGTAATAGTTA
TAGGTTTACAAATTTTGATAAAAGCGCCGATAATGGCAGTCTGGGCAATCACTAAAATCTACAACAAAGGATTTGAATGG
ACAATGGCAACTGCTGTGACTGTTTTGGTTTTAATTGTATTCGTTGCAATACTAATGGTTATGGTTATGCCGAAATTCAG
AATGATGCAAACTTTAACCGACAACATCAACAGGATTTTGCGTGAAAATTTGACAGGACTTGCGGTTATCAGAGCGTACA
ACTCCGAAGATTATAGGGAAGGAAAGTTCGATGAAGCAAACATCGATTTGACAAGAACACAATTGTTCACAAGTCGTGCG
ATGTCGATGCTTTTTCCTATGATTAATTTCAGCATGTCGATGTTGACACTCGTGATTTATTTTATCGGTGCGGGACTCAT
CAATGCTGCGCAAATGATGGACAAATACGTCTTGTTCTCGAACATGGTTGTTTTCAGTTCGTATGCAATGCAAGTTATCA
TGTCATTTATGATGATGAGCATGATTTTCATCATGGTTCCAAGAGCAGAAATTTCTGCCAAACGTATCAACGAAGTTTTG
GATACAGAACTTTCTATAAAAGATGGAAATCTTGATAGCTCAAATGAAGATTACGAATATGAAATTGAATTTGACGATGT
GTCTTTCAAATATACAGATTCTGAACAATATATCTTGCAAAATATTGATTTTAAAGTCAAAAAAGGAGAGAAAGTTGCCA
TCATCGGATCAACTGGATCTGGGAAAAGTACTATCTTGAATTTGCTTTTGAGATTTTACGATGCGACTGAAGGTGTCGTC
AAAATCCAAGGAGTAGATATCAAACAGTACAAGCTCAAATTCTTGTACGAAAAAATCGCAGCAGTGTTGCAAAAATCATT
TCTTTTCAAAGGGGATATTAAATCGAACATTTCTTTTGGAGATGAAGATACCGACACGAAAATGGTAGAAGAAGCAGCGG
ATACTTCACAATCTATAGAATTTATAGATAAATTTGACGACAAATACGACCATGAAATTGCACAATTAGGAAAGAATGTT
TCTGGTGGACAAAAACAAAGACTATCCATTGCAAGAGCAATCTACAGAAAGCCTGATATATTCTTGTTTGACGATAGTTT
CTCGGCACTTGATTTCAAGACAGACAGTGAGCTTAGACATCAACTCAAAGAAAACAACCCTGATTCCACAACGATAGTTG
TCGCTCAAAGAGTGGGATCTATAATGGATTCTGATCAAATAATCGTACTTGAAAATGGCCAAATCGTTGGGATAGGTAAG
CACAAAGATTTATTAAAAAATTGTGAAGTTTACAAAGAAATAGCCTACTCGCAATTAACAGAGGAGGAATTAAATGCCTA
G

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-506)

ABC transporter transmembrane region (ABC_membrane)

(20-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.49

100

0.493