Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LK443_RS09350 Genome accession   NZ_CP085953
Coordinates   1887127..1888932 (-) Length   601 a.a.
NCBI ID   WP_227931623.1    Uniprot ID   -
Organism   Granulicatella elegans strain FDAARGOS_1559     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882127..1893932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK443_RS09325 (LK443_09325) - 1882570..1883232 (-) 663 WP_006702960.1 GTP pyrophosphokinase -
  LK443_RS09330 (LK443_09330) - 1883392..1883982 (+) 591 WP_227931619.1 CYTH domain-containing protein -
  LK443_RS09335 (LK443_09335) - 1884063..1884749 (+) 687 WP_227931620.1 DsbA family protein -
  LK443_RS09340 (LK443_09340) rnhC 1884803..1885717 (+) 915 WP_227931621.1 ribonuclease HIII -
  LK443_RS09345 (LK443_09345) - 1885873..1886775 (-) 903 WP_227931622.1 magnesium transporter CorA family protein -
  LK443_RS09350 (LK443_09350) pepF 1887127..1888932 (-) 1806 WP_227931623.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68972.15 Da        Isoelectric Point: 4.7138

>NTDB_id=621630 LK443_RS09350 WP_227931623.1 1887127..1888932(-) (pepF) [Granulicatella elegans strain FDAARGOS_1559]
MSDKKPLTREEVPVELTWDLTLIYPDNSGFEADLAFVSEKIPVIAASKETALQSGENLYNYLLLSNQVEEKIETAYVYSH
LKADQDTTNDENQVLNQRAFSVYVELSGASSWFEPAILEKSDEEFEKFFKEEPRLEEFRVALEAARIRKGHVLSDREEAL
LSKANEVFSGPGKTFNFLNNADLKFGSIKNENGEEVELTHGNYTTFLESTNRDVRKNAFETKYKPYIQLKNTFASTLGSE
VKAHNFKALARNYESSRQAALSSNQVPEEVFDALVKVVNEKLPLLHRYIALQQKALGLDELHMYDMYVPITGEAPITYNY
EEASKATFEALKPLGEEYQDILKQAYDQRWIDVAENVGKRSGGYSSGGYATAPYILLNWHDDLSNFFTLVHELGHSAHSY
FTRHTQPFQYGDYSIFLAEIASTTNENLLTDYLLKKHTDKESQKYILNNYLNRVKSTIFRQTQFAEFEHQIHVADQKGEP
LTQAAMAEIYAAINKKYYANVIQDEEIAYEWTRIPHFYMNYYVYQYATGMAAATALADKILHGTPEDLEAYLNYLRAGRS
DKPIEVMKKAGVDMTQTQYLYDAMNVFEQRLEQLEALMNEE

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=621630 LK443_RS09350 WP_227931623.1 1887127..1888932(-) (pepF) [Granulicatella elegans strain FDAARGOS_1559]
ATGAGTGATAAAAAACCATTAACTCGTGAAGAAGTTCCTGTAGAATTAACATGGGACTTAACATTAATTTATCCAGATAA
TTCTGGTTTTGAGGCTGATTTAGCTTTTGTATCAGAAAAAATTCCAGTAATTGCTGCAAGTAAAGAAACAGCTTTACAAT
CTGGTGAAAATTTATATAACTACTTATTATTATCCAATCAAGTAGAAGAAAAAATTGAAACAGCTTATGTGTATTCACAC
TTAAAAGCAGACCAAGATACTACAAATGATGAAAATCAAGTATTAAATCAACGTGCTTTCTCAGTATATGTTGAATTATC
AGGTGCTTCATCATGGTTTGAACCAGCTATTTTAGAAAAATCAGATGAAGAATTTGAAAAATTCTTTAAAGAAGAACCAC
GTTTGGAAGAATTCCGTGTTGCATTAGAAGCAGCTCGTATTCGTAAAGGTCACGTATTATCCGATCGTGAAGAAGCACTA
TTATCAAAAGCAAATGAAGTTTTCTCTGGGCCAGGAAAAACATTCAATTTCTTAAATAATGCGGATCTTAAATTTGGTTC
TATCAAAAACGAAAATGGGGAAGAAGTGGAATTAACTCACGGAAATTACACAACTTTCTTAGAGTCAACAAACCGTGATG
TGCGTAAAAATGCATTTGAAACAAAATATAAACCATATATTCAATTGAAAAATACATTCGCAAGTACATTAGGTTCAGAA
GTGAAAGCTCATAACTTTAAAGCGTTAGCTCGCAACTATGAATCAAGCCGTCAAGCAGCATTATCTTCTAATCAAGTTCC
TGAAGAAGTGTTTGATGCATTAGTAAAAGTTGTGAATGAAAAATTACCATTATTACACCGTTATATTGCTTTACAACAAA
AAGCTTTAGGATTAGATGAATTACATATGTATGATATGTATGTTCCAATTACTGGTGAAGCTCCAATTACTTACAATTAT
GAAGAAGCTTCTAAAGCAACCTTTGAAGCATTGAAACCATTAGGGGAAGAATATCAAGATATTCTTAAACAAGCCTATGA
TCAACGTTGGATTGATGTTGCTGAAAATGTTGGTAAACGTAGTGGTGGTTATTCATCAGGTGGTTATGCAACTGCGCCTT
ATATTTTATTAAACTGGCACGATGATTTAAGTAATTTCTTTACATTAGTGCATGAATTAGGACATAGTGCGCATAGTTAT
TTCACTCGTCATACTCAACCATTCCAATATGGGGATTATTCAATTTTCTTAGCAGAAATTGCTTCTACAACGAATGAAAA
CTTATTAACAGACTACTTATTGAAGAAACATACGGATAAAGAGAGTCAAAAATATATTTTAAATAATTATTTAAATCGTG
TGAAATCAACTATTTTCCGTCAAACTCAATTTGCTGAATTTGAGCATCAAATTCATGTGGCGGATCAAAAAGGTGAGCCA
TTAACTCAAGCAGCAATGGCTGAGATTTATGCTGCAATTAATAAAAAATATTATGCAAATGTGATTCAAGATGAAGAGAT
TGCGTATGAGTGGACTCGTATTCCTCACTTCTATATGAATTACTATGTATATCAATATGCAACTGGTATGGCTGCTGCAA
CTGCTTTAGCAGATAAGATTTTACATGGTACTCCTGAAGATTTAGAGGCTTACTTAAACTACTTACGTGCTGGACGTAGT
GACAAACCGATTGAGGTTATGAAAAAAGCAGGGGTAGATATGACTCAAACTCAATATCTATATGATGCAATGAATGTGTT
CGAACAACGACTAGAACAATTAGAAGCGTTGATGAACGAAGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-185)

Peptidase family M3 (Peptidase_M3)

(206-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.25

99.667

0.501