Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   LK401_RS03670 Genome accession   NZ_CP085952
Coordinates   704735..705031 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699735..710031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS03645 (LK401_03645) - 699948..700700 (-) 753 WP_011272149.1 DUF3800 domain-containing protein -
  LK401_RS03650 (LK401_03650) aroE 700712..701518 (-) 807 WP_011272150.1 shikimate dehydrogenase -
  LK401_RS03655 (LK401_03655) - 701522..702073 (-) 552 WP_011272151.1 Sua5/YciO/YrdC/YwlC family protein -
  LK401_RS03660 (LK401_03660) - 702089..702625 (-) 537 WP_011272152.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  LK401_RS03665 (LK401_03665) - 702635..704551 (-) 1917 WP_038440439.1 ABC transporter ATP-binding protein -
  LK401_RS03670 (LK401_03670) HI0659 704735..705031 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  LK401_RS03675 (LK401_03675) - 705024..705245 (-) 222 WP_038439526.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LK401_RS03680 (LK401_03680) - 705352..708389 (-) 3038 Protein_693 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=621586 LK401_RS03670 WP_005650837.1 704735..705031(-) (HI0659) [Haemophilus influenzae strain FDAARGOS_1560]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=621586 LK401_RS03670 WP_005650837.1 704735..705031(-) (HI0659) [Haemophilus influenzae strain FDAARGOS_1560]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1