Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LK401_RS03405 Genome accession   NZ_CP085952
Coordinates   651175..651828 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 646175..656828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS03405 (LK401_03405) sxy/tfoX 651175..651828 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  LK401_RS03410 (LK401_03410) recA 652200..653264 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  LK401_RS03415 (LK401_03415) recX 653343..653801 (+) 459 WP_011272121.1 recombination regulator RecX -
  LK401_RS03420 (LK401_03420) crcB 653798..654184 (-) 387 WP_011272122.1 fluoride efflux transporter CrcB -
  LK401_RS03425 (LK401_03425) - 654184..655002 (-) 819 WP_011272123.1 Cof-type HAD-IIB family hydrolase -
  LK401_RS03430 (LK401_03430) - 655405..656409 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=621584 LK401_RS03405 WP_005692773.1 651175..651828(-) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1560]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=621584 LK401_RS03405 WP_005692773.1 651175..651828(-) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1560]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991