Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LK431_RS08625 Genome accession   NZ_CP085951
Coordinates   1759432..1761798 (-) Length   788 a.a.
NCBI ID   WP_111695444.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1561     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754432..1766798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK431_RS08610 (LK431_08610) kdsB 1755722..1756486 (-) 765 WP_021035539.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LK431_RS08615 (LK431_08615) lpxK 1756557..1757555 (-) 999 WP_111695446.1 tetraacyldisaccharide 4'-kinase -
  LK431_RS08620 (LK431_08620) msbA 1757628..1759391 (-) 1764 WP_111695445.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LK431_RS08625 (LK431_08625) rec2 1759432..1761798 (-) 2367 WP_111695444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK431_RS08630 (LK431_08630) dksA 1762058..1762495 (+) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  LK431_RS08635 (LK431_08635) pcnB 1762660..1764102 (+) 1443 WP_411690087.1 polynucleotide adenylyltransferase PcnB -
  LK431_RS08640 (LK431_08640) folK 1764111..1764593 (+) 483 WP_111695443.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LK431_RS08645 (LK431_08645) tsaE 1764669..1765145 (+) 477 WP_111695442.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LK431_RS08650 (LK431_08650) - 1765153..1766451 (+) 1299 WP_111695441.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89606.21 Da        Isoelectric Point: 9.9767

>NTDB_id=621566 LK431_RS08625 WP_111695444.1 1759432..1761798(-) (rec2) [Haemophilus influenzae strain FDAARGOS_1561]
MKLNLITLAVLLIVADLTLLFLLQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYLSK
GITAVGTVKSAVKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQLGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFFLVPLILFAVFTNGAFFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWCIYRKQE
ASSSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLHRYKSAVENTAVSGQVRVNFFQDRLVIQQARTEFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=621566 LK431_RS08625 WP_111695444.1 1759432..1761798(-) (rec2) [Haemophilus influenzae strain FDAARGOS_1561]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACTGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GTCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATCTTTCAAAA
GGAATTACGGCTGTTGGAACCGTAAAAAGTGCGGTGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTTGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTGGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTACCACTTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGTTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGTGTATTTATCGAAAACAAGAG
GCTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGGCTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGATGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTTGATGA
TGGAAAGCATCGAGTTTTGCTGACGGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCTCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATACTTACTTTCTCAGGTTAGACCAGATGTGGCG
ATTATTTCTAGCGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTACGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGTAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-475)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.782

100

0.938