Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LK431_RS03835 Genome accession   NZ_CP085951
Coordinates   755857..756576 (+) Length   239 a.a.
NCBI ID   WP_111695216.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1561     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 750857..761576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK431_RS03815 (LK431_03815) - 751795..752325 (-) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -
  LK431_RS03820 (LK431_03820) nrfE 752325..754232 (-) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  LK431_RS03825 (LK431_03825) suhB 754342..755145 (-) 804 WP_005631453.1 inositol-1-monophosphatase -
  LK431_RS03830 (LK431_03830) comN 755345..755857 (+) 513 WP_054249351.1 pilus assembly FimT family protein Machinery gene
  LK431_RS03835 (LK431_03835) comO 755857..756576 (+) 720 WP_111695216.1 PulJ/GspJ family protein Machinery gene
  LK431_RS03840 (LK431_03840) comP 756573..757256 (+) 684 WP_054249353.1 DUF2572 family protein Machinery gene
  LK431_RS03845 (LK431_03845) comQ 757249..757536 (+) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  LK431_RS03850 (LK431_03850) recC 757582..760941 (+) 3360 WP_111695215.1 exodeoxyribonuclease V subunit gamma -
  LK431_RS03855 (LK431_03855) nrdR 761003..761452 (+) 450 WP_021034780.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26892.27 Da        Isoelectric Point: 9.3761

>NTDB_id=621557 LK431_RS03835 WP_111695216.1 755857..756576(+) (comO) [Haemophilus influenzae strain FDAARGOS_1561]
MMKTLLKGQILLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
FLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQAPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=621557 LK431_RS03835 WP_111695216.1 755857..756576(+) (comO) [Haemophilus influenzae strain FDAARGOS_1561]
ATGATGAAAACATTATTAAAAGGGCAAATCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TTTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
ATTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAGCCCCAAACATCAGTTATGAAACCTCCCTTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

96.639

99.582

0.962