Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   LK420_RS06950 Genome accession   NZ_CP085949
Coordinates   1445587..1445883 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440587..1450883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS06920 (LK420_06920) - 1441243..1441407 (-) 165 WP_021034578.1 hypothetical protein -
  LK420_RS09060 - 1441535..1441624 (-) 90 Protein_1334 ABC transporter -
  LK420_RS06940 (LK420_06940) - 1441987..1444974 (+) 2988 WP_061725097.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  LK420_RS06945 (LK420_06945) - 1445235..1445594 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LK420_RS06950 (LK420_06950) HI0659 1445587..1445883 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  LK420_RS06955 (LK420_06955) - 1446040..1447956 (+) 1917 WP_021034575.1 ABC transporter ATP-binding protein -
  LK420_RS06960 (LK420_06960) - 1447966..1448502 (+) 537 WP_021034574.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  LK420_RS06965 (LK420_06965) - 1448518..1449069 (+) 552 WP_021034573.1 Sua5/YciO/YrdC/YwlC family protein -
  LK420_RS06970 (LK420_06970) aroE 1449073..1449879 (+) 807 WP_021034572.1 shikimate dehydrogenase -
  LK420_RS06975 (LK420_06975) - 1450093..1450656 (+) 564 WP_021034570.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=621513 LK420_RS06950 WP_005650837.1 1445587..1445883(+) (HI0659) [Haemophilus influenzae strain FDAARGOS_1562]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=621513 LK420_RS06950 WP_005650837.1 1445587..1445883(+) (HI0659) [Haemophilus influenzae strain FDAARGOS_1562]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1