Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LK447_RS01810 Genome accession   NZ_CP085947
Coordinates   360482..361795 (-) Length   437 a.a.
NCBI ID   WP_000653635.1    Uniprot ID   B5Z908
Organism   Helicobacter pylori strain FDAARGOS_1563     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355482..366795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK447_RS01780 (LK447_01780) nadC 355947..356768 (-) 822 WP_000404070.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LK447_RS01785 (LK447_01785) nadA 356768..357778 (-) 1011 WP_001141825.1 quinolinate synthase NadA -
  LK447_RS01790 (LK447_01790) - 357768..358571 (-) 804 WP_000226229.1 phosphatidylserine decarboxylase -
  LK447_RS01795 (LK447_01795) - 358565..359071 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  LK447_RS01800 (LK447_01800) - 359084..359578 (-) 495 WP_001872943.1 hypothetical protein -
  LK447_RS01805 (LK447_01805) mqnP 359571..360455 (-) 885 WP_187940470.1 menaquinone biosynthesis prenyltransferase MqnP -
  LK447_RS01810 (LK447_01810) comEC/comE3 360482..361795 (-) 1314 WP_000653635.1 ComEC/Rec2 family competence protein Machinery gene
  LK447_RS01815 (LK447_01815) - 361792..363258 (-) 1467 WP_000349729.1 replicative DNA helicase -
  LK447_RS01820 (LK447_01820) - 363269..364669 (-) 1401 WP_000954007.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  LK447_RS01825 (LK447_01825) crdS 364672..365874 (-) 1203 WP_079990390.1 copper-sensing histidine kinase CrdS -
  LK447_RS01830 (LK447_01830) crdR 365840..366481 (-) 642 WP_001169789.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50343.29 Da        Isoelectric Point: 9.9128

>NTDB_id=621478 LK447_RS01810 WP_000653635.1 360482..361795(-) (comEC/comE3) [Helicobacter pylori strain FDAARGOS_1563]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAHFFGRIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLARSFQVISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLNMPLTIPTISIPSPLWLLGVHLFLT
IVSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=621478 LK447_RS01810 WP_000653635.1 360482..361795(-) (comEC/comE3) [Helicobacter pylori strain FDAARGOS_1563]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATTCTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCATGCGCATTTTTTTGGCAGGATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCCATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCGCC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTGTGAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z908

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959