Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N755_RS07820 Genome accession   NC_022353
Coordinates   1487298..1487609 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni 00-2544     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482298..1492609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N755_RS07800 (N755_01504) ctsE 1483167..1484726 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  N755_RS07805 (N755_01505) ctsX 1484716..1485303 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N755_RS07810 (N755_01506) ctsP 1485307..1485915 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N755_RS07815 (N755_01507) ctsD 1485908..1487320 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N755_RS07820 (N755_01508) ctsR 1487298..1487609 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  N755_RS07825 (N755_01509) nifJ 1487633..1491193 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N755_RS07830 (N755_01510) - 1491286..1491927 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=62145 N755_RS07820 WP_002855438.1 1487298..1487609(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2544]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=62145 N755_RS07820 WP_002855438.1 1487298..1487609(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2544]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment