Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LK450_RS08975 Genome accession   NZ_CP085939
Coordinates   1818710..1820470 (+) Length   586 a.a.
NCBI ID   WP_003031741.1    Uniprot ID   A0A3S4LY97
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813710..1825470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS08955 (LK450_08955) scrK 1814968..1815867 (+) 900 WP_018543579.1 fructokinase ScrK -
  LK450_RS08960 (LK450_08960) - 1815935..1816345 (+) 411 WP_003031760.1 peptide deformylase -
  LK450_RS08965 (LK450_08965) - 1816503..1816961 (+) 459 WP_003031754.1 MarR family winged helix-turn-helix transcriptional regulator -
  LK450_RS08970 (LK450_08970) rcrP 1816954..1818720 (+) 1767 WP_003031770.1 ABC transporter ATP-binding protein Regulator
  LK450_RS08975 (LK450_08975) rcrQ 1818710..1820470 (+) 1761 WP_003031741.1 ABC transporter ATP-binding protein Regulator
  LK450_RS08980 (LK450_08980) - 1820680..1820994 (+) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  LK450_RS08985 (LK450_08985) - 1821005..1821325 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  LK450_RS08990 (LK450_08990) - 1821459..1822856 (-) 1398 WP_018543578.1 glycoside hydrolase family 1 protein -
  LK450_RS08995 (LK450_08995) celB 1822999..1824267 (+) 1269 WP_003031790.1 PTS cellobiose transporter subunit IIC -
  LK450_RS09000 (LK450_09000) - 1824301..1825026 (+) 726 WP_003031784.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64922.84 Da        Isoelectric Point: 5.6601

>NTDB_id=621446 LK450_RS08975 WP_003031741.1 1818710..1820470(+) (rcrQ) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MENKKSSLFSQVKPYIKGFQFPLLIAFVGAAVSSIITVYGPDKLKEITNLITEGMRSQIDLQAISNIALFLAILYAAGAL
LNYVQSFIISSVIQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFAFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATDESKVAFQTLNTNLYNS
MWKSQFISGIMMPLMMFVGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRIFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKAQQLTTLKGDVAFDKVFFGYNPDRTIIHDFSANAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAAAKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=621446 LK450_RS08975 WP_003031741.1 1818710..1820470(+) (rcrQ) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCATTGCATT
TGTGGGAGCGGCAGTGTCTAGTATTATTACAGTTTATGGACCGGACAAATTAAAAGAAATTACGAACCTCATCACAGAAG
GAATGCGAAGTCAGATTGATTTGCAGGCGATCTCTAATATTGCTCTTTTCTTAGCGATTTTGTACGCAGCAGGTGCTTTG
TTAAATTACGTTCAATCTTTTATCATTTCATCTGTTATTCAGCATTTCTCCAAACGCTTGCGGACAGCTATTGCTGAAAA
AATCAATAAATTACCATTGCGGTATTTTGATAGTCATTCTCAAGGAGATACTCTTTCGCGGGTCACAAATGACGTGGATA
CTGTTGGGCAATCTTTGAACCAAAGTTTGGGAACGGTGATTTCATCAAGTTTGCTTCTCATTGCAGTTCTCTTTATGATG
TTTTACAATAATGTGGTCTTGTCCTTTGTAACGATTGGTTCAGTCTTGATTGGCTTTGCCTTTGTTGCTTTGATTATGGG
AAAATCTCAACGATTCTTCCGAGCGCAACAAGAAAATCTTGCCAGCGTCAATGGCTATGTGGAAGAAATGTACTCTGGGC
ATAATGTCATTGTCAGCTACAATGCCACAGACGAATCCAAAGTAGCCTTTCAAACACTTAATACTAACCTTTACAACAGT
ATGTGGAAATCACAATTCATTTCAGGGATTATGATGCCGCTTATGATGTTTGTAGGGAACTTCGGTTACGTTATGGTTGT
TTTGGTTGGGGCGAGCATGGCCTTGAATGGCGATGTCACTATGGGAACGATTGTTGCCTTTATGGTATATGTACGGATTT
TCTCTCAACCGTTGTCACAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGCGCTGCTATGGGACGCGTATTTGAA
TTTTTAGCAGAGCCTGAAATGGAAAATGATGAACACAAAGCGCAACAACTCACGACCCTAAAAGGAGATGTTGCCTTTGA
TAAGGTATTCTTTGGTTATAATCCAGATCGAACGATTATTCATGATTTCTCTGCCAATGCAAAAGCAGGGCAAAAAATTG
CCATTGTCGGTCCGACCGGTGCTGGGAAGACGACCATTGTCAACTTGCTCATGAAATTTTATGAGATTGATAAGGGTCGC
ATTACAATTGACGGTGTTGATACGAAGCAAATGAAACGTTCTGAGGTACACGATGCCTTCTCCATGGTTCTCCAAGACAC
TTGGTTATTTGAGGGAACGATTAAGGAAAATTTGATTTACAATCAGAAAAATATTTCTGACGAAGCAGTTGTGGCAGCTG
CCAAAGCTGTTGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATATGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTGGGGCAAAAGCAATTGTTGACCATTGCGCGTGCCCTTCTTAAAGATGCTCCATTGCTTATCTTGGACGAAGCGAC
TTCATCTGTTGATACACGGACGGAAGAGCTGATTCAAAAAGCGATGGATAAACTAATGGAAGGACGAACTTCCTTTGTCA
TTGCTCACCGTTTGTCAACAATTCGTAATGCTGATTTGATTCTCGTTATGCGAGATGGCAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGACGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4LY97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

72.337

99.317

0.718