Detailed information NTG0621339

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LK421_RS11715
• Genome accession: NZ_CP085930
• Coordinates: 2685445..2686806 (+)
• Length: 453 a.a.
• NCBI ID: WP_004849065.1
• Uniprot ID: -
• Organism: Coprococcus eutactus ATCC 27759 strain FDAARGOS_1581
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2680445..2691806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK421_RS11700 (LK421_11700)	purD	2680877..2682148 (+)	1272	WP_004849070.1	phosphoribosylamine--glycine ligase	-
LK421_RS11705 (LK421_11705)	-	2682299..2684776 (+)	2478	WP_004849068.1	ATP-dependent Clp protease ATP-binding subunit	-
LK421_RS11710 (LK421_11710)	-	2684921..2685337 (+)	417	WP_004849067.1	hypothetical protein	-
LK421_RS11715 (LK421_11715)	radA	2685445..2686806 (+)	1362	WP_004849065.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49272.11 Da
• Isoelectric Point: 6.9779

>NTDB_id=621339 LK421_RS11715 WP_004849065.1 2685445..2686806(+) (radA) [Coprococcus eutactus ATCC 27759 strain FDAARGOS_1581]
MAKEKQVFFCQECGFESTKWMGQCPGCKAWNSFCEEKVTVGAKSQSGRRTVVAPTSILEVETTDETRFTTGIGELNRVLG
GGIVSGSLVLVGGDPGIGKSTILLQMCRNMSEMGQKILYVSGEESLSQIKMRAERIGRFTKDMLLLCVNNLEDVEEYVKK
DTPKIIVIDSIQTIVTDDIESAPGSVSQVKEVTARLMRMAKQTGIAIFIVGHVTKEGTVAGPRTLEHMVDTVLYFEGERN
AGFRVLRAVKNRFGSTNEIGVFEMKGNGLAEVKNPSQLMLDGRPDDTSGSVVVCTMEGTRPILLEIQALVCQSSFNLPRR
TSVGLDYNRVNLLLAVLEKRGGIVMAGCDAYVNIAGGMRLDDPSADLGIVFALVSSFKNRAIPSDMVMFGEMGLSGEVRG
VSGAEQRVREAAKMGFKTCIIPKSNMDNVKKMKDLGDMKVVGVANIQQALEYI

Nucleotide

• Length: 1362 bp

>NTDB_id=621339 LK421_RS11715 WP_004849065.1 2685445..2686806(+) (radA) [Coprococcus eutactus ATCC 27759 strain FDAARGOS_1581]
ATGGCAAAAGAAAAACAGGTGTTTTTTTGCCAGGAATGTGGATTTGAATCGACAAAGTGGATGGGGCAGTGCCCTGGATG
CAAGGCCTGGAATTCATTTTGTGAGGAGAAAGTGACGGTAGGCGCCAAGAGTCAGTCCGGTAGAAGGACTGTCGTGGCGC
CTACAAGCATTTTAGAGGTTGAGACGACTGACGAGACACGATTTACCACAGGAATAGGCGAATTAAACAGAGTGTTAGGT
GGCGGAATAGTGAGTGGTTCACTGGTGCTTGTGGGAGGAGATCCAGGAATAGGTAAGTCCACCATATTGCTGCAGATGTG
CAGAAACATGTCCGAGATGGGACAGAAGATACTGTATGTGTCGGGTGAGGAATCCCTTTCACAGATAAAGATGAGGGCGG
AGCGTATAGGAAGATTTACAAAGGATATGCTGCTTCTCTGTGTCAATAATCTTGAGGATGTGGAGGAATATGTCAAGAAA
GACACGCCTAAGATCATTGTCATAGATTCTATACAGACGATAGTAACGGATGATATAGAGTCTGCGCCGGGAAGCGTATC
CCAGGTGAAGGAAGTGACAGCCAGACTCATGAGAATGGCGAAACAGACAGGAATAGCAATATTTATAGTCGGACATGTGA
CAAAGGAGGGAACTGTGGCGGGACCAAGAACCCTTGAGCACATGGTTGATACAGTTCTCTATTTTGAGGGCGAGCGCAAT
GCAGGCTTTAGAGTACTTCGGGCTGTGAAGAATAGATTTGGATCGACGAATGAGATCGGTGTATTTGAGATGAAGGGAAA
TGGCCTTGCGGAAGTGAAGAATCCATCACAGTTGATGCTTGATGGAAGACCGGATGACACGTCGGGTTCCGTCGTAGTGT
GTACGATGGAGGGAACAAGACCTATACTTCTAGAGATACAGGCGCTGGTCTGCCAGTCGAGCTTCAATCTTCCAAGGCGT
ACCAGTGTAGGACTCGATTACAATAGAGTGAATCTGCTTCTTGCAGTGCTCGAGAAGCGAGGCGGAATAGTTATGGCGGG
ATGCGATGCCTATGTGAATATTGCCGGTGGTATGAGACTTGATGATCCATCTGCAGATCTTGGAATAGTATTTGCACTGG
TGTCGAGTTTTAAGAACCGTGCTATACCATCAGATATGGTTATGTTTGGCGAGATGGGGCTTTCAGGTGAAGTGCGCGGA
GTTTCCGGAGCGGAGCAGAGAGTGCGCGAGGCAGCAAAGATGGGATTCAAGACATGCATAATACCAAAGTCAAATATGGA
TAATGTAAAGAAGATGAAAGACCTTGGTGATATGAAAGTAGTGGGTGTGGCCAATATACAACAGGCACTGGAGTACATAT
AG

Domains

Predicted by InterproScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (356-451)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-33)

• AAA domain (AAA_25) (59-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	54.585	100	0.552
radA	Streptococcus mitis NCTC 12261	52.298	100	0.528
radA	Streptococcus pneumoniae Rx1	52.298	100	0.528
radA	Streptococcus pneumoniae D39	52.298	100	0.528
radA	Streptococcus pneumoniae R6	52.298	100	0.528
radA	Streptococcus pneumoniae TIGR4	52.298	100	0.528
radA	Streptococcus mitis SK321	52.079	100	0.525