Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LK457_RS04680 Genome accession   NZ_CP085925
Coordinates   893569..893943 (+) Length   124 a.a.
NCBI ID   WP_023385389.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain FDAARGOS_1591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888569..898943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK457_RS04660 (LK457_04660) - 889676..890488 (-) 813 WP_023385397.1 HDOD domain-containing protein -
  LK457_RS04665 (LK457_04665) ilvC 890635..891657 (+) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  LK457_RS04670 (LK457_04670) - 891658..892821 (+) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  LK457_RS04675 (LK457_04675) dprA 892805..893572 (+) 768 WP_023385391.1 DNA-processing protein DprA Machinery gene
  LK457_RS04680 (LK457_04680) dprB 893569..893943 (+) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  LK457_RS04685 (LK457_04685) - 893951..894814 (+) 864 WP_023385388.1 SAM-dependent methyltransferase -
  LK457_RS04690 (LK457_04690) - 894811..896040 (-) 1230 WP_023385386.1 hypothetical protein -
  LK457_RS04695 (LK457_04695) queA 896051..897070 (-) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LK457_RS04700 (LK457_04700) tatC 897067..897822 (-) 756 WP_023385382.1 twin-arginine translocase subunit TatC -
  LK457_RS04705 (LK457_04705) tatB 897822..898277 (-) 456 WP_023385380.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13650.08 Da        Isoelectric Point: 8.4775

>NTDB_id=621309 LK457_RS04680 WP_023385389.1 893569..893943(+) (dprB) [Campylobacter fetus subsp. testudinum strain FDAARGOS_1591]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DAEIIYVDEAYSSCEASELSKDSKDGKFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=621309 LK457_RS04680 WP_023385389.1 893569..893943(+) (dprB) [Campylobacter fetus subsp. testudinum strain FDAARGOS_1591]
TTGATAGTAGCTATCGATGTTGGACTAAAAAGAATAGGAGTTGCGGTTGCTGTTTTGCCGACTGTTGTGCTTCCTAGTGA
GCCTATTTTACGTAAAAATCGCAATCAAGCAGCAAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCAACAAAACTAG
TAGTTGGTTTGCCAAAAGGCGGTAGCTGCGAAGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTGGTGGGTTTT
GATGCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGTGAATTATCCAAAGATTCTAAAGATGGCAA
ATTTGATAGTATCGCTGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.612

100

0.516