Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | LK457_RS03295 | Genome accession | NZ_CP085925 |
| Coordinates | 617668..618612 (-) | Length | 314 a.a. |
| NCBI ID | WP_039362751.1 | Uniprot ID | A0AAX0HDB2 |
| Organism | Campylobacter fetus subsp. testudinum strain FDAARGOS_1591 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 602730..639487 | 617668..618612 | within | 0 |
Gene organization within MGE regions
Location: 602730..639487
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK457_RS03235 (LK457_03235) | - | 602730..604517 (-) | 1788 | WP_023385786.1 | DNA polymerase III subunit gamma/tau | - |
| LK457_RS03240 (LK457_03240) | rho | 604526..605860 (-) | 1335 | WP_023385784.1 | transcription termination factor Rho | - |
| LK457_RS03245 (LK457_03245) | - | 606219..606839 (-) | 621 | WP_023385782.1 | tetratricopeptide repeat protein | - |
| LK457_RS03250 (LK457_03250) | - | 607113..609482 (+) | 2370 | WP_023385781.1 | heavy metal translocating P-type ATPase | - |
| LK457_RS03255 (LK457_03255) | ccoS | 609485..609715 (+) | 231 | WP_010390783.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| LK457_RS03260 (LK457_03260) | - | 609719..610033 (-) | 315 | WP_023385779.1 | c-type cytochrome | - |
| LK457_RS03265 (LK457_03265) | - | 610260..613787 (+) | 3528 | WP_039362757.1 | S8 family serine peptidase | - |
| LK457_RS03270 (LK457_03270) | - | 613851..614165 (-) | 315 | WP_023385776.1 | c-type cytochrome | - |
| LK457_RS03275 (LK457_03275) | gmhB | 614296..614802 (+) | 507 | WP_023385774.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| LK457_RS03280 (LK457_03280) | rfaD | 614799..615767 (+) | 969 | WP_023385772.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| LK457_RS03285 (LK457_03285) | rfaE1 | 615760..617136 (+) | 1377 | WP_023385770.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| LK457_RS03290 (LK457_03290) | gmhA | 617139..617702 (+) | 564 | WP_023385769.1 | D-sedoheptulose 7-phosphate isomerase | - |
| LK457_RS03295 (LK457_03295) | waaF | 617668..618612 (-) | 945 | WP_039362751.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| LK457_RS03300 (LK457_03300) | - | 618596..619627 (-) | 1032 | WP_023385766.1 | glycosyltransferase family 4 protein | - |
| LK457_RS03305 (LK457_03305) | - | 619715..621019 (+) | 1305 | WP_023385765.1 | hypothetical protein | - |
| LK457_RS03310 (LK457_03310) | - | 620994..621914 (+) | 921 | WP_023385764.1 | glycosyltransferase family 9 protein | - |
| LK457_RS03315 (LK457_03315) | - | 621911..622966 (+) | 1056 | WP_023385763.1 | glycosyltransferase family 4 protein | - |
| LK457_RS03320 (LK457_03320) | - | 622956..624035 (+) | 1080 | WP_023385762.1 | glycosyltransferase family 9 protein | - |
| LK457_RS03325 (LK457_03325) | - | 624032..625180 (+) | 1149 | WP_023385761.1 | glycosyltransferase family 4 protein | - |
| LK457_RS03330 (LK457_03330) | - | 625125..626165 (-) | 1041 | WP_227932519.1 | glycosyltransferase family 9 protein | - |
| LK457_RS03335 (LK457_03335) | - | 626300..627070 (+) | 771 | WP_023385759.1 | polysaccharide deacetylase family protein | - |
| LK457_RS03340 (LK457_03340) | rfaQ | 627049..628119 (-) | 1071 | WP_023385758.1 | putative lipopolysaccharide heptosyltransferase III | - |
| LK457_RS03345 (LK457_03345) | - | 628116..628811 (-) | 696 | WP_023385757.1 | glycosyltransferase family 2 protein | - |
| LK457_RS03350 (LK457_03350) | - | 628808..629692 (-) | 885 | WP_023385756.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| LK457_RS03355 (LK457_03355) | waaC | 629685..630653 (-) | 969 | WP_023385755.1 | lipopolysaccharide heptosyltransferase I | - |
| LK457_RS03360 (LK457_03360) | - | 630713..631531 (+) | 819 | WP_023385754.1 | 3'-5' exonuclease | - |
| LK457_RS03365 (LK457_03365) | - | 631573..632790 (+) | 1218 | WP_023385753.1 | nucleotide sugar dehydrogenase | - |
| LK457_RS03370 (LK457_03370) | - | 632800..633858 (+) | 1059 | WP_023385751.1 | NAD-dependent epimerase | - |
| LK457_RS03375 (LK457_03375) | - | 633855..634673 (+) | 819 | WP_023385750.1 | DNA ligase | - |
| LK457_RS03380 (LK457_03380) | - | 634684..634926 (+) | 243 | WP_023385748.1 | hypothetical protein | - |
| LK457_RS03385 (LK457_03385) | - | 635226..635537 (+) | 312 | WP_023385746.1 | hypothetical protein | - |
| LK457_RS03390 (LK457_03390) | galE | 635590..636582 (+) | 993 | WP_023385745.1 | UDP-glucose 4-epimerase GalE | - |
| LK457_RS03395 (LK457_03395) | - | 636583..636963 (-) | 381 | WP_023385743.1 | GtrA family protein | - |
| LK457_RS03400 (LK457_03400) | - | 636964..638481 (-) | 1518 | WP_023385741.1 | glucosyltransferase domain-containing protein | - |
| LK457_RS03405 (LK457_03405) | - | 638486..639487 (-) | 1002 | WP_023385740.1 | glycosyltransferase family 2 protein | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 35717.85 Da Isoelectric Point: 9.3438
>NTDB_id=621306 LK457_RS03295 WP_039362751.1 617668..618612(-) (waaF) [Campylobacter fetus subsp. testudinum strain FDAARGOS_1591]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFADVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AAAFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFADVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AAAFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK
Nucleotide
Download Length: 945 bp
>NTDB_id=621306 LK457_RS03295 WP_039362751.1 617668..618612(-) (waaF) [Campylobacter fetus subsp. testudinum strain FDAARGOS_1591]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCAAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAATGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAACTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTATGGAAGC
GCGAAAAGATGGTATCCGCAGTACTTTGCAGATGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAGCTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGTCCTTTAAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCAAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAATGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAACTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTATGGAAGC
GCGAAAAGATGGTATCCGCAGTACTTTGCAGATGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAGCTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGTCCTTTAAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.243 |
99.682 |
0.481 |