Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LK454_RS05725 Genome accession   NZ_CP085923
Coordinates   1171233..1171808 (-) Length   191 a.a.
NCBI ID   WP_001203606.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1601     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166233..1176808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK454_RS05715 (LK454_05715) - 1167904..1169166 (-) 1263 WP_000580112.1 restriction endonuclease subunit S -
  LK454_RS05720 (LK454_05720) - 1169163..1171199 (-) 2037 WP_001039920.1 N-6 DNA methylase -
  LK454_RS05725 (LK454_05725) comFC 1171233..1171808 (-) 576 WP_001203606.1 ComF family protein Machinery gene
  LK454_RS05730 (LK454_05730) tmk 1171796..1172371 (-) 576 WP_000289724.1 dTMP kinase -
  LK454_RS05735 (LK454_05735) coaD 1172373..1172846 (-) 474 WP_001169242.1 pantetheine-phosphate adenylyltransferase -
  LK454_RS05740 (LK454_05740) - 1172846..1173409 (-) 564 WP_000780095.1 UbiX family flavin prenyltransferase -
  LK454_RS05745 (LK454_05745) flgA 1173419..1174075 (-) 657 WP_000697659.1 flagellar basal body P-ring formation chaperone FlgA -
  LK454_RS05750 (LK454_05750) uvrD 1174072..1176117 (-) 2046 WP_001864185.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21391.92 Da        Isoelectric Point: 8.6728

>NTDB_id=621289 LK454_RS05725 WP_001203606.1 1171233..1171808(-) (comFC) [Helicobacter pylori strain FDAARGOS_1601]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=621289 LK454_RS05725 WP_001203606.1 1171233..1171808(-) (comFC) [Helicobacter pylori strain FDAARGOS_1601]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGTGCTGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

97.906

100

0.979