Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LK454_RS05265 Genome accession   NZ_CP085923
Coordinates   1072594..1073907 (-) Length   437 a.a.
NCBI ID   WP_000653586.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1601     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067594..1078907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK454_RS05235 (LK454_05235) nadC 1068057..1068878 (-) 822 WP_000453294.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LK454_RS05240 (LK454_05240) nadA 1068878..1069888 (-) 1011 WP_001141784.1 quinolinate synthase NadA -
  LK454_RS05245 (LK454_05245) - 1069878..1070681 (-) 804 WP_000226153.1 phosphatidylserine decarboxylase -
  LK454_RS05250 (LK454_05250) - 1070675..1071181 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  LK454_RS05255 (LK454_05255) - 1071194..1071688 (-) 495 WP_054833696.1 hypothetical protein -
  LK454_RS05260 (LK454_05260) mqnP 1071681..1072523 (-) 843 WP_237705159.1 menaquinone biosynthesis prenyltransferase MqnP -
  LK454_RS05265 (LK454_05265) comEC/comE3 1072594..1073907 (-) 1314 WP_000653586.1 ComEC/Rec2 family competence protein Machinery gene
  LK454_RS05270 (LK454_05270) - 1073904..1075364 (-) 1461 WP_000349728.1 replicative DNA helicase -
  LK454_RS05275 (LK454_05275) - 1075375..1076769 (-) 1395 WP_000953959.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  LK454_RS05280 (LK454_05280) crdS 1076772..1077974 (-) 1203 WP_080012271.1 copper-sensing histidine kinase CrdS -
  LK454_RS05285 (LK454_05285) crdR 1077940..1078581 (-) 642 WP_001169762.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50296.20 Da        Isoelectric Point: 9.8572

>NTDB_id=621287 LK454_RS05265 WP_000653586.1 1072594..1073907(-) (comEC/comE3) [Helicobacter pylori strain FDAARGOS_1601]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLRSCFFQTYSFSLTRKHNFKSHLRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLMRSFQAIVLS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDHFLSMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=621287 LK454_RS05265 WP_000653586.1 1072594..1073907(-) (comEC/comE3) [Helicobacter pylori strain FDAARGOS_1601]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGATCAAATCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTAGTGGGTAATTTGTATCGCGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCACGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAATGCGATCGTTTCAAGCGATCGTTTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATTGTTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCCTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945