Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N564_RS07530 Genome accession   NC_022352
Coordinates   1448778..1449089 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni 00-2426     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443778..1454089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N564_RS07510 (N564_01463) ctsE 1444647..1446206 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  N564_RS07515 (N564_01464) ctsX 1446196..1446783 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N564_RS07520 (N564_01465) ctsP 1446787..1447395 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N564_RS07525 (N564_01466) ctsD 1447388..1448800 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N564_RS07530 (N564_01467) ctsR 1448778..1449089 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  N564_RS07535 (N564_01468) nifJ 1449113..1452673 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N564_RS07540 (N564_01469) - 1452766..1453407 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=62116 N564_RS07530 WP_002855438.1 1448778..1449089(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2426]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=62116 N564_RS07530 WP_002855438.1 1448778..1449089(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2426]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment