Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FH508_RS23095 Genome accession   NZ_CP085880
Coordinates   4643463..4644839 (-) Length   458 a.a.
NCBI ID   WP_173479243.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4638463..4649839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS23075 (FH508_0023140) gltX 4639042..4640502 (-) 1461 WP_217270327.1 glutamate--tRNA ligase -
  FH508_RS23080 (FH508_0023145) ispF 4640627..4641103 (-) 477 WP_024364393.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FH508_RS23085 (FH508_0023150) ispD 4641325..4642017 (-) 693 WP_173479275.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FH508_RS23090 (FH508_0023155) - 4642030..4643115 (-) 1086 WP_173479244.1 PIN/TRAM domain-containing protein -
  FH508_RS23095 (FH508_0023160) radA 4643463..4644839 (-) 1377 WP_173479243.1 DNA repair protein RadA Machinery gene
  FH508_RS23100 (FH508_0023165) - 4644951..4647395 (-) 2445 WP_173479242.1 ATP-dependent Clp protease ATP-binding subunit -
  FH508_RS23105 (FH508_0023170) - 4647385..4648494 (-) 1110 WP_173479241.1 protein arginine kinase -
  FH508_RS23110 (FH508_0023175) - 4648491..4649033 (-) 543 WP_173479274.1 UvrB/UvrC motif-containing protein -
  FH508_RS23115 (FH508_0023180) - 4649047..4649517 (-) 471 WP_173479240.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50088.94 Da        Isoelectric Point: 7.3824

>NTDB_id=621114 FH508_RS23095 WP_173479243.1 4643463..4644839(-) (radA) [Lysinibacillus sp. CD3-6]
MAKKKTKFVCTGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKAIPIIQVEAAEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLELLNQ
TIEDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVTRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=621114 FH508_RS23095 WP_173479243.1 4643463..4644839(-) (radA) [Lysinibacillus sp. CD3-6]
ATGGCGAAGAAAAAAACTAAATTTGTCTGTACGGGTTGTGGTTATGAATCTGCAAAATGGATGGGCCGTTGTCCAGGATG
TGGAGAATGGAATAAGATGGTTGAAGAAGTGGAGGTCGTTGCAAAAGGTCCCCGTGGAGCATTCCAACATTCGGCGACAG
TAACACAGAAGGCTATACCTATTATACAAGTGGAAGCAGCTGAGGAGTCTCGGGTAGCTACAGAAATGGGCGAGCTCAAT
CGGGTTTTAGGTGGAGGCATCGTGCCAGGTTCCCTTGTATTAATCGGTGGTGATCCTGGGATTGGGAAATCAACGCTTTT
ATTACAAGTATCAGCGTTGCTATCAAATAAAGGTCACCGTGTGCTGTATATCTCTGGTGAAGAATCTATTCGACAAACGA
AATTGCGTGCAGAGCGTTTAGGAGTAATTTCACAAGAGCTTTATATTTATTCGGAGACGAATTTAGAGCTATTAAACCAA
ACAATAGAGGATGTACAGCCGAAGTTTGTTATCGTGGACTCCATACAAACAGTTTTCCATCCTGAGGTGACGAGTGCACC
TGGTAGTGTCTCGCAAGTACGTGAATGTACAGCAGAGCTTATGCGAATTGCCAAAACGAAAGGCATTGCTATTTTCTTAG
TAGGGCATGTAACGAAGGAAGGGCAAATTGCAGGGCCGCGTATATTAGAGCATATGGTGGATACAGTGCTGTATTTCGAA
GGAGAGCGCCATCACAACCACCGTATTTTGCGGAGTCAGAAAAACCGCTTCGGTTCAACAAATGAAATTGCTATTTTTGA
AATGCTTCAAGGTGGATTAAAGGAAGTATTGAATCCATCCGAGTTGTTTTTACAGGAGCGCTCACAAGGTGCGGCAGGCT
CAACAATTGTGGCATCGATGGAGGGAACACGACCGATTTTAGTAGAAATTCAATCGCTTGTGACGCCGACGAGCTTCAAT
TATCCAAAACGTATGGCTACAGGCGTAGACCAAAACCGCGTGCAATTGCTGATGGCGGTGCTTGAGAAGCGGATGGGCCT
CATGCTACAAGCACAGGATGCATATATTAAAGTTGCTGGCGGTGTGAAGCTAGATGAGCCTGCAATTGATCTAGCGGTGT
TGACGAGTATTGTTTCTAGTTTTAAAGATCAGGCAGTGCGTGCTACAGACTGCTTTATTGGGGAAGTAGGTTTAACAGGA
GAGGTTCGTCGTGTAACACGTATTGAACAGCGTGTAATTGAAGCAGCAAAACTAGGCTTTAAACGAGCGTTTATTCCAGC
CTCTAATATAGGTGGCTGGGACTTCCCACAAGGCATCGAGATTGTTGGTGTAGAGACGATTAAGGATGCATTAAATGCCT
GCTTTAGAGAACTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(66-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.264

99.127

0.697
  radA Streptococcus pneumoniae Rx1

62.719

99.563

0.624
  radA Streptococcus pneumoniae D39

62.719

99.563

0.624
  radA Streptococcus pneumoniae R6

62.719

99.563

0.624
  radA Streptococcus pneumoniae TIGR4

62.719

99.563

0.624
  radA Streptococcus mitis NCTC 12261

62.719

99.563

0.624
  radA Streptococcus mitis SK321

62.719

99.563

0.624