Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FH508_RS21935 Genome accession   NZ_CP085880
Coordinates   4430199..4431149 (-) Length   316 a.a.
NCBI ID   WP_173479378.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4425199..4436149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS21910 (FH508_0021975) - 4426187..4426825 (+) 639 WP_139860008.1 hypothetical protein -
  FH508_RS21915 (FH508_0021980) - 4427115..4427429 (-) 315 WP_139860006.1 antibiotic biosynthesis monooxygenase -
  FH508_RS21920 (FH508_0021985) - 4427431..4428438 (-) 1008 WP_139860004.1 siderophore ABC transporter substrate-binding protein -
  FH508_RS21925 (FH508_0021990) - 4428495..4429256 (-) 762 WP_173479380.1 ABC transporter ATP-binding protein -
  FH508_RS21930 (FH508_0021995) - 4429253..4430206 (-) 954 WP_173479379.1 iron chelate uptake ABC transporter family permease subunit -
  FH508_RS21935 (FH508_0022000) ceuB 4430199..4431149 (-) 951 WP_173479378.1 ABC transporter permease Machinery gene
  FH508_RS21940 (FH508_0022005) - 4431433..4432488 (-) 1056 WP_173479377.1 hypothetical protein -
  FH508_RS21945 (FH508_0022010) menC 4432555..4433664 (-) 1110 WP_173479376.1 o-succinylbenzoate synthase -
  FH508_RS21950 (FH508_0022015) - 4433686..4434510 (-) 825 WP_173479375.1 GNAT family N-acetyltransferase -
  FH508_RS21955 (FH508_0022020) - 4434526..4435653 (-) 1128 WP_173479374.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34743.01 Da        Isoelectric Point: 10.1796

>NTDB_id=621113 FH508_RS21935 WP_173479378.1 4430199..4431149(-) (ceuB) [Lysinibacillus sp. CD3-6]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFGSEETRLFLISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLMFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLIMKGRYELLYISVPVLIMAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVTTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDIIGRVLIFPYEIPISMTVGVIGSAIFLIMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=621113 FH508_RS21935 WP_173479378.1 4430199..4431149(-) (ceuB) [Lysinibacillus sp. CD3-6]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATTGTGTCACTATTCATTGGTGTAGTAAATATTAAGCC
AAGTGACTTATTGGACTTCGGATCAGAAGAAACTAGACTATTCTTAATTAGTCGTATACCAAGACTGGTGGCAATTTTGC
TGGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACGACAGCA
GGAACTTTAGATGCTACGAAATTAGGTGTTCTAATTTCAATGATGTTTTTTACAAATGTCACGTACTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACGTTAATGTTTATGCAAATATTAAATCGAATAAAGTTCAAAGATGCGATTT
TTATACCGCTTATAGGCTTAATGTTCGGAAATATCCTATCTTCTATTACGACGTTCTTTGCGTATAAGGCTGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTGATAATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
TGTTCTAATAATGGCTTACATTTATGCAAACCGTTTCACAGTGGCTGGAATGGGTGAGGATTTTGCAAAAAACCTTGGTC
TTTCCTACAAATTCGTTGTGAATTTAGGTTTAGTGTTAGTAGCTCTAGTGACAACTACGGTGGTACTAACAGTAGGTGTG
ATTCCGTTTCTAGGTTTAATTATTCCAAATATTATATCGCTGTTCAAAGGGGATAACCTTGCAAAGACATTACCGCACAC
GGCTTTACTCGGTATGTCGTTCCTATTATTCTGTGATATTATAGGGCGCGTGTTAATTTTCCCTTATGAAATTCCGATAA
GTATGACGGTCGGCGTCATCGGAAGTGCAATCTTTCTAATTATGTTATTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

100

0.532