Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FH508_RS14750 Genome accession   NZ_CP085880
Coordinates   2971079..2972770 (-) Length   563 a.a.
NCBI ID   WP_173479025.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2966079..2977770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS14730 (FH508_0014745) - 2967732..2967932 (-) 201 WP_173479021.1 hypothetical protein -
  FH508_RS14735 (FH508_0014750) - 2968131..2968508 (-) 378 WP_173479022.1 PH domain-containing protein -
  FH508_RS14740 (FH508_0014755) spo0A 2968851..2969642 (-) 792 WP_173479023.1 sporulation transcription factor Spo0A -
  FH508_RS14745 (FH508_0014760) - 2970004..2970951 (-) 948 WP_173479024.1 SpoIVB peptidase S55 domain-containing protein -
  FH508_RS14750 (FH508_0014765) recN 2971079..2972770 (-) 1692 WP_173479025.1 DNA repair protein RecN Machinery gene
  FH508_RS14755 (FH508_0014770) ahrC 2972918..2973367 (-) 450 WP_173479026.1 transcriptional regulator AhrC/ArgR -
  FH508_RS14760 (FH508_0014775) - 2973469..2974287 (-) 819 WP_173479027.1 TlyA family RNA methyltransferase -
  FH508_RS14765 (FH508_0014780) dxs 2974287..2976188 (-) 1902 WP_173479028.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FH508_RS14770 (FH508_0014785) - 2976353..2977234 (-) 882 WP_173479029.1 polyprenyl synthetase family protein -
  FH508_RS14775 (FH508_0014790) xseB 2977240..2977473 (-) 234 WP_173479030.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63355.17 Da        Isoelectric Point: 4.7384

>NTDB_id=621103 FH508_RS14750 WP_173479025.1 2971079..2972770(-) (recN) [Lysinibacillus sp. CD3-6]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSAAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIYLLDHFAEEQLAPIL
EKYSKQYNEYRALKKELATISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAATIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMIAYYEKIKTELGELLNRDEILQVKERKVLEMEVILGELAEELSHVRKEAANDLSEAIMAELRELHMEKAKFIVNFD
ALPYFDVNGKDQVVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTHARIEEVSRMMSGAEITELTLQHATELLKMANERKK
HMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=621103 FH508_RS14750 WP_173479025.1 2971079..2972770(-) (recN) [Lysinibacillus sp. CD3-6]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATTATTGAGGATTTAACAGTTAGTTTTTCAGATGGGCTAACTGTGTT
AACAGGAGAAACCGGTGCTGGTAAGTCAATAATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGTAATTCGGAAT
TTATACGTCATGGTGCAAAAAAAGCCGAATTAGGTGGGCTATTTCAAATTTCAAGTGCTGCACATCCTGTATATAAAAAA
CTGGAGGAGGCAGGCATTGAAATAGAAGAGGATTCCATTATTTTGCGTCGGGACTTAAATGACTCGGGCAAAAGTGTCTG
TCGGGTTAATGGTAAATTAGTGCCATTATCGGTTTTGCGTGACATTGGTGCAAGTCTTATTGATATTCATGGTCAACATG
AAAACCAAGAACTTATGGATGAAAAGCAACATATTTATTTACTCGATCACTTCGCGGAAGAGCAACTAGCACCAATTCTT
GAAAAATACAGTAAACAATATAACGAATATCGTGCATTGAAAAAAGAATTAGCGACAATTTCTATAGATGAGCAGTTAAT
GGCTCAGCGTATTGATTTGTATCAGTTCCAAATGAAAGAACTTGAAGATGCAAATTTAAAGCTAGGTGAAGAAGATGAGC
TTCTTGATGAACGTCGACGTCTGATGAATTTTAATAAAATATTTGAGCGCTCAAGTGCTGCTTATGAAGCGATTCAAGGT
GAAACAAAAGGTCTTGACTGGATCGGCACAGCAATGGGAGCATTAGATGATGCAGCGACGATTGATGAACAGTTTAAAGA
GGCATCTGAGTCAGTAACAACTGCCTTTTACGCACTGCAAGATGCAGCATATCAAGTGAAAAACGTTTTAGATGAGCTAG
AATTTGATCCAGCGCGCTTAAATGAAGTTGAGCAACGCCTTGCGCTGTTCCAAAACTTAAAGCGTAAATATGGCTCAACA
GTCGAAGAAATGATTGCCTATTATGAAAAAATTAAAACTGAGCTAGGTGAGCTTTTAAATCGCGATGAAATTTTACAAGT
AAAAGAACGGAAAGTACTTGAGATGGAAGTCATATTAGGCGAACTTGCAGAAGAACTATCACATGTTCGAAAAGAAGCGG
CAAATGACTTAAGTGAAGCCATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTAAATTTTGAT
GCTTTACCTTATTTTGATGTAAATGGTAAAGATCAAGTTGTATTTTATATTTCAACGAATGTCGGTGAACCACCTAAATC
TTTACCGAAAATTGCTTCTGGTGGAGAACTATCACGTATGATGTTAGCACTAAAGACAATTTTCTCATCTTCAAACGGTG
TGACGTCCATCATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGAGTGGCGCAAGCAATTGCTGAAAAAATTGCAGCC
ATTTCGGTTAATTCTCAAGTGCTGTGTATTTCACATCTTCCACAAGTGGCAGCGATGGCCGATCATCATTACTTTATTAA
AAAAGAGGTTGAACATGATCGTACATTTACATCATTAGCTGAAATTGATACCCATGCACGTATTGAGGAAGTAAGCAGAA
TGATGTCAGGTGCAGAAATTACCGAATTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCTAACGAACGAAAAAAA
CATATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.431

100

0.536