Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HP399_RS13910 Genome accession   NZ_CP085876
Coordinates   2960571..2960999 (-) Length   142 a.a.
NCBI ID   WP_173621380.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2955571..2965999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS13890 (HP399_013905) - 2956749..2957414 (+) 666 WP_173621382.1 hypothetical protein -
  HP399_RS13895 (HP399_013910) - 2957725..2958378 (+) 654 WP_255654192.1 phage portal protein -
  HP399_RS13900 (HP399_013915) - 2958990..2959811 (-) 822 WP_173621381.1 DUF6492 family protein -
  HP399_RS31000 - 2960162..2960395 (+) 234 WP_255654145.1 hypothetical protein -
  HP399_RS13910 (HP399_013925) nucA/comI 2960571..2960999 (-) 429 WP_173621380.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HP399_RS13915 (HP399_013930) - 2961199..2962071 (-) 873 WP_228088517.1 discoidin domain-containing protein -
  HP399_RS13920 (HP399_013935) - 2962499..2962945 (-) 447 WP_173621379.1 hypothetical protein -
  HP399_RS31150 - 2963100..2963438 (-) 339 WP_370642720.1 M23 family metallopeptidase -
  HP399_RS13925 (HP399_013940) - 2963901..2964278 (+) 378 WP_173621378.1 PH domain-containing protein -
  HP399_RS13930 (HP399_013945) - 2965119..2965376 (+) 258 WP_228088518.1 MerR family transcriptional regulator -
  HP399_RS13935 (HP399_013950) - 2965406..2965642 (+) 237 WP_228088519.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15573.72 Da        Isoelectric Point: 5.6740

>NTDB_id=621061 HP399_RS13910 WP_173621380.1 2960571..2960999(-) (nucA/comI) [Brevibacillus sp. DP1.3A]
MTQKKMLMLIVVLLIGAAYFFGLVPIEEKTVSNGNVDHTIVFPSDRYPQTAKHIKEAIASGKSAICTIDRDGADENRQDS
LKGIPTKKGYDRDEWPMAMCAEGGTGAHIEYISPSDNRGAGSWISNQLEDYPNGTKVEIVVK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=621061 HP399_RS13910 WP_173621380.1 2960571..2960999(-) (nucA/comI) [Brevibacillus sp. DP1.3A]
ATGACACAGAAAAAAATGCTGATGTTGATTGTGGTGCTGCTGATCGGCGCCGCCTATTTCTTTGGACTTGTGCCAATAGA
GGAAAAAACAGTCAGCAACGGGAACGTAGACCATACGATTGTTTTTCCTTCTGATCGATATCCTCAGACTGCAAAGCATA
TCAAAGAAGCGATTGCCTCTGGGAAGTCAGCTATATGCACAATTGACCGCGATGGAGCAGATGAAAATCGCCAAGATTCT
CTCAAGGGCATTCCTACAAAAAAGGGATATGATCGAGATGAATGGCCTATGGCCATGTGCGCTGAGGGAGGCACGGGAGC
ACATATCGAATACATATCGCCTTCAGATAATCGAGGAGCTGGATCGTGGATATCCAATCAATTAGAGGATTATCCAAACG
GAACAAAAGTTGAAATCGTGGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.465

90.845

0.549