Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HP399_RS01905 Genome accession   NZ_CP085876
Coordinates   332912..333865 (+) Length   317 a.a.
NCBI ID   WP_017246627.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327912..338865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS01885 (HP399_001890) - 330023..330379 (-) 357 WP_007724662.1 response regulator -
  HP399_RS01890 (HP399_001895) - 330571..330933 (-) 363 WP_106833498.1 carboxymuconolactone decarboxylase family protein -
  HP399_RS01895 (HP399_001900) - 331020..331694 (-) 675 WP_173619903.1 Crp/Fnr family transcriptional regulator -
  HP399_RS01900 (HP399_001905) - 331896..332660 (+) 765 WP_173619902.1 DUF4097 family beta strand repeat-containing protein -
  HP399_RS01905 (HP399_001910) ceuB 332912..333865 (+) 954 WP_017246627.1 ABC transporter permease Machinery gene
  HP399_RS01910 (HP399_001915) - 333862..334803 (+) 942 WP_173619901.1 iron chelate uptake ABC transporter family permease subunit -
  HP399_RS01915 (HP399_001920) - 334800..335558 (+) 759 WP_173619900.1 ABC transporter ATP-binding protein -
  HP399_RS01920 (HP399_001925) - 335663..336652 (+) 990 WP_304502537.1 siderophore ABC transporter substrate-binding protein -
  HP399_RS01925 (HP399_001930) - 336738..337394 (-) 657 WP_173619899.1 DJ-1/PfpI family protein -
  HP399_RS01930 (HP399_001935) - 337565..338428 (-) 864 WP_173619898.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35143.29 Da        Isoelectric Point: 9.6839

>NTDB_id=621046 HP399_RS01905 WP_017246627.1 332912..333865(+) (ceuB) [Brevibacillus sp. DP1.3A]
MKKRYLVVALILLSFVSLFIGVKDISPWDLFNLTDDKVQVLWISRIPRLISIIIAGISMSIAGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLLVFADASSWVRLLVAFAFALFGTFVFMKILERIKFKDSIFIPLVGLMFGNIVGSITTFFAYKHDLM
QNMSAWLHGDFSTIMKGSYELLYISIPLVIIAYLYANKFTIAGMGEEFAINLGLNYKHVVNIGLVIVACVTSVVILTVGT
IPFLGLIIPNLVTIYLGDNLKKSLSHTALLGAVFVLACDILGRLIIFPYEISIGLMVGVIGSGIFVYLLMRRKAYEQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=621046 HP399_RS01905 WP_017246627.1 332912..333865(+) (ceuB) [Brevibacillus sp. DP1.3A]
ATGAAAAAGAGATATTTGGTTGTAGCACTTATTTTGCTATCGTTCGTTTCACTTTTTATTGGCGTGAAAGATATATCTCC
GTGGGATCTGTTCAATCTCACAGATGACAAAGTGCAAGTGCTGTGGATTAGCAGGATTCCGCGTTTGATCAGCATTATCA
TCGCAGGGATCAGCATGAGTATCGCCGGATTGATCATGCAACAGCTGACCCGTAACAAGTTCGTTTCTCCAACGACAGCA
GGGACTGAGGACTCCGTTCGATTCGGAATATTGGTTTCACTTTTGGTGTTCGCTGATGCGAGCTCTTGGGTGAGGCTGCT
CGTTGCTTTTGCATTTGCTCTCTTTGGAACCTTTGTCTTTATGAAGATTCTTGAAAGAATCAAATTTAAAGACTCCATTT
TCATCCCGTTAGTGGGACTGATGTTTGGAAACATCGTCGGATCCATCACGACGTTTTTCGCTTATAAGCATGACCTGATG
CAAAACATGTCTGCTTGGTTGCATGGAGATTTCTCCACCATCATGAAAGGCAGCTACGAGCTTTTGTACATAAGTATTCC
GCTGGTGATTATCGCTTACTTGTATGCGAACAAGTTCACCATTGCGGGAATGGGTGAAGAGTTCGCCATCAACCTCGGGT
TGAACTACAAGCATGTCGTCAACATTGGATTGGTCATCGTCGCTTGTGTAACTTCGGTAGTCATTCTCACGGTAGGGACA
ATCCCGTTTTTGGGGCTGATCATTCCCAACCTGGTTACGATCTACCTGGGAGATAACCTGAAAAAAAGCTTATCTCATAC
CGCTTTGCTTGGCGCGGTGTTTGTACTTGCTTGTGATATCCTGGGACGCCTCATCATTTTCCCATACGAGATTTCCATCG
GCTTGATGGTTGGGGTCATAGGTAGCGGGATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.952

98.738

0.543