Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HP399_RS01230 Genome accession   NZ_CP085876
Coordinates   212698..214065 (+) Length   455 a.a.
NCBI ID   WP_173621058.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 207698..219065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS01210 (HP399_001210) - 207982..208446 (+) 465 WP_173621057.1 CtsR family transcriptional regulator -
  HP399_RS01215 (HP399_001215) - 208463..208981 (+) 519 WP_007716182.1 UvrB/UvrC motif-containing protein -
  HP399_RS01220 (HP399_001220) - 209001..210074 (+) 1074 WP_172143232.1 protein arginine kinase -
  HP399_RS01225 (HP399_001225) - 210141..212591 (+) 2451 WP_106841303.1 ATP-dependent Clp protease ATP-binding subunit -
  HP399_RS01230 (HP399_001230) radA 212698..214065 (+) 1368 WP_173621058.1 DNA repair protein RadA Machinery gene
  HP399_RS01235 (HP399_001235) disA 214074..215150 (+) 1077 WP_048036021.1 DNA integrity scanning diadenylate cyclase DisA -
  HP399_RS01240 (HP399_001240) pssA 215265..215993 (+) 729 WP_017247027.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HP399_RS01245 (HP399_001245) - 216089..216484 (-) 396 WP_007716195.1 hypothetical protein -
  HP399_RS01250 (HP399_001250) - 216772..217860 (+) 1089 WP_173621059.1 PIN/TRAM domain-containing protein -
  HP399_RS01255 (HP399_001255) ispD 217887..218573 (+) 687 WP_173621060.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HP399_RS01260 (HP399_001260) ispF 218577..219050 (+) 474 WP_048035642.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49445.81 Da        Isoelectric Point: 6.8250

>NTDB_id=621045 HP399_RS01230 WP_173621058.1 212698..214065(+) (radA) [Brevibacillus sp. DP1.3A]
MSKYKTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKNAHRHEGMSGGQRQSAIPLTQVASEEEPRMDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHI
NQVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRTATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPADIQVIGVSNIADALNEVIRR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=621045 HP399_RS01230 WP_173621058.1 212698..214065(+) (radA) [Brevibacillus sp. DP1.3A]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCACCAAAATGGATGGGAAAATGCCCAGGCTG
CAGCAGCTGGAACACCTTGGTGGAAGAAGTGACGGTAAAAAATGCACATCGTCACGAAGGGATGAGCGGCGGCCAGCGTC
AATCTGCGATTCCATTGACCCAGGTAGCCAGTGAAGAAGAGCCACGCATGGATACGACAATCGGAGAATTGAATCGTGTA
CTTGGTGGAGGACTTGTTCCGGGTTCACTCATTTTGGTTGGGGGAGACCCCGGAATTGGGAAATCGACATTGCTTTTGCA
GACATCTTTTGCCTTGGCTCATCAAGGGGCGAAGGTTCTCTATGTATCTGGAGAGGAGTCGGCAAAGCAAATCAAAATTC
GCGCGGATCGACTCCATTTGCAAACGCCACCGATGTTTGTATTGGCAGAAAATGATTTGGATTTGATCGAACAGCATATT
AATCAAGTAGACCCGGATGTGCTGATTATTGACTCGATCCAGACCGTGTTTCACCCGACGATCCAATCGGCTGCTGGAAG
TGTCGCGCAAGTGCGGGAGGCGACTGCCCAATTGATGCGGATTGCAAAAGGGAAAGGAATTGGTACCTTCATTGTCGGTC
ACGTTACCAAGGAAGGATCTATCGCCGGTCCGCGTATGCTTGAGCACATGGTAGATGCTGTTCTTTATTTTGAAGGAGAG
CGCCACAATACGTTTCGAATTTTGCGCGCCGTCAAAAACCGTTTTGGTTCGACAAATGAAATCGGTATTTTCGAGATGAA
GGATCGCGGTTTGGAGGAAGTGGCGAATCCATCTGAGATATTTTTGGCAGAGCGTCCATTTGGTGTTGCGGGTTCGACAG
TCGTAGCCAGTATGGAGGGCACACGTCCCGTCTTGGTTGAGCTGCAAGCTCTCGTTGCCCCGACCAGCTTTGTAACCCCT
CGGAGAACGGCAACAGGGGTCGATCATCAGCGTGTGGCGATGATCATGGCAGTGTTAGAAAAGCGCATGGGCATGATGCT
GCAAAATCAGGATGCTTATGTAAACGTAGCAGGTGGGGTCAGATTGGATGAGCCAGCGGTTGATTTGGCGATTGCCGTAA
GCATTGCAAGCAGTTTCCGTGACCACGCTACCAATCCGCATGATGTCGTTATCGGAGAGATTGGTTTGACTGGAGAGGTG
CGCGGTGTCTCCCGTATCGAGCAACGAGTACGAGAAGCACATAAGTTAGGGTTTAAGCGTGTCATCATCCCGGAGAAAAA
CATCCGTGGTCTGGATGCGCCAGCTGATATTCAAGTAATTGGTGTGAGCAATATTGCCGATGCGTTGAATGAGGTGATAA
GGAGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

99.341

0.655
  radA Streptococcus mitis NCTC 12261

58.057

99.56

0.578
  radA Streptococcus pneumoniae Rx1

58.057

99.56

0.578
  radA Streptococcus pneumoniae D39

58.057

99.56

0.578
  radA Streptococcus pneumoniae R6

58.057

99.56

0.578
  radA Streptococcus pneumoniae TIGR4

58.057

99.56

0.578
  radA Streptococcus mitis SK321

58.057

99.56

0.578