Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HP435_RS17490 Genome accession   NZ_CP085874
Coordinates   3801835..3802281 (+) Length   148 a.a.
NCBI ID   WP_173599667.1    Uniprot ID   -
Organism   Brevibacillus sp. HD3.3A     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3796835..3807281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS17475 (HP435_17520) - 3797465..3798352 (+) 888 WP_173599670.1 DMT family transporter -
  HP435_RS17480 (HP435_17525) - 3798504..3800102 (-) 1599 WP_173599669.1 amidohydrolase -
  HP435_RS17485 (HP435_17530) - 3800318..3801634 (+) 1317 WP_173599668.1 MFS transporter -
  HP435_RS17490 (HP435_17535) nucA/comI 3801835..3802281 (+) 447 WP_173599667.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HP435_RS17495 (HP435_17540) - 3802333..3804069 (-) 1737 WP_173599666.1 ABC transporter ATP-binding protein -
  HP435_RS17500 (HP435_17545) - 3804038..3805906 (-) 1869 WP_173599665.1 ABC transporter ATP-binding protein -
  HP435_RS17505 (HP435_17550) - 3805948..3806757 (-) 810 WP_122965103.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16491.68 Da        Isoelectric Point: 8.4836

>NTDB_id=621022 HP435_RS17490 WP_173599667.1 3801835..3802281(+) (nucA/comI) [Brevibacillus sp. HD3.3A]
MRIKRILFTLAVLIGIGLFSLLTEQQNSQTTNTSVQADVVLTFPRERYPETAEHIRSAIEKGQSAVCTIDRKSADKHRED
SLRGIPTKRGYDRDEWPMAMCKEGGKGADIAYISPSDNRGAGSWIANQLEKYPDGTRVQIVIGDQPAR

Nucleotide


Download         Length: 447 bp        

>NTDB_id=621022 HP435_RS17490 WP_173599667.1 3801835..3802281(+) (nucA/comI) [Brevibacillus sp. HD3.3A]
GTGCGAATCAAACGAATTTTATTCACCCTCGCTGTTTTGATCGGGATCGGATTGTTCAGTCTGTTAACCGAGCAACAGAA
CAGCCAGACCACAAACACGTCTGTGCAAGCCGATGTCGTTCTGACCTTTCCCCGCGAGCGCTATCCCGAGACGGCAGAGC
ACATTCGCTCTGCCATCGAAAAAGGCCAGTCTGCTGTCTGCACCATCGACCGCAAATCGGCGGACAAGCACCGCGAAGAT
TCCTTGCGCGGCATCCCGACCAAACGCGGCTACGATCGCGACGAATGGCCGATGGCAATGTGCAAGGAAGGCGGCAAGGG
AGCAGATATCGCTTATATTTCCCCTTCCGACAACCGCGGGGCAGGTTCGTGGATCGCCAACCAGCTCGAAAAGTACCCGG
ATGGCACGCGCGTGCAAATCGTCATCGGCGATCAGCCTGCCCGCTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.923

87.838

0.5