Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   N564_RS05670 Genome accession   NC_022352
Coordinates   1084323..1085282 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 00-2426     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1064619..1089325 1084323..1085282 within 0


Gene organization within MGE regions


Location: 1064619..1089325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N564_RS05575 (N564_01096) pglI 1064619..1065548 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  N564_RS05580 (N564_01097) pglH 1065541..1066620 (-) 1080 WP_010891911.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  N564_RS05585 (N564_01098) pglK 1066617..1068311 (-) 1695 WP_002858308.1 ABC-type lipopolysaccharide transporter PglK -
  N564_RS05590 (N564_01099) galE 1068305..1069291 (-) 987 WP_002858414.1 UDP-glucose 4-epimerase GalE -
  N564_RS05595 (N564_01100) - 1069349..1070143 (-) 795 WP_002853812.1 3'-5' exonuclease -
  N564_RS05600 (N564_01101) waaC 1070209..1071237 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  N564_RS05605 (N564_01102) htrB 1071227..1072114 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  N564_RS05610 (N564_01103) - 1072111..1073658 (+) 1548 WP_002858148.1 glycosyltransferase -
  N564_RS05615 (N564_02160) - 1073662..1074834 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  N564_RS05620 (N564_02165) - 1074818..1075813 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  N564_RS05625 (N564_02170) - 1075871..1077040 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  N564_RS05630 (N564_02175) wlaN 1077029..1077940 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  N564_RS05635 (N564_01106) cstIII 1077995..1078879 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  N564_RS05640 (N564_01107) neuB1 1078860..1079891 (+) 1032 WP_002858213.1 sialic acid synthase -
  N564_RS05645 (N564_01108) neuC 1079888..1081003 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  N564_RS09375 - 1081000..1081914 (+) 915 Protein_1091 beta-1,4-N-acetylgalactosaminyltransferase -
  N564_RS09380 - 1081948..1082610 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  N564_RS05660 (N564_01110) - 1082605..1083456 (-) 852 WP_014516804.1 glycosyltransferase -
  N564_RS05665 (N564_01111) waaV 1083440..1084264 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  N564_RS05670 (N564_01112) waaF 1084323..1085282 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  N564_RS05675 (N564_01113) gmhA 1085263..1085823 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  N564_RS05680 (N564_01114) rfaE1 1085820..1087205 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  N564_RS05685 (N564_01115) rfaD 1087198..1088151 (-) 954 WP_002858041.1 ADP-glyceromanno-heptose 6-epimerase -
  N564_RS05690 (N564_01116) gmhB 1088152..1088712 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  N564_RS05695 (N564_01117) - 1088794..1089096 (+) 303 WP_002852762.1 cytochrome c -
  N564_RS05700 (N564_01118) ccoS 1089119..1089325 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=62102 N564_RS05670 WP_002875425.1 1084323..1085282(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2426]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=62102 N564_RS05670 WP_002875425.1 1084323..1085282(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2426]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment