Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7G92_RS04730 Genome accession   NZ_CP085873
Coordinates   990932..993349 (-) Length   805 a.a.
NCBI ID   WP_228403254.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D3081     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985932..998349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G92_RS04710 (K7G92_000943) kdsB 987158..987937 (-) 780 WP_228403252.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7G92_RS04715 (K7G92_000944) - 987939..988121 (-) 183 WP_223668310.1 Trm112 family protein -
  K7G92_RS04720 (K7G92_000945) lpxK 988148..989113 (-) 966 WP_228403253.1 tetraacyldisaccharide 4'-kinase -
  K7G92_RS04725 (K7G92_000946) msbA 989141..990889 (-) 1749 WP_191134674.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7G92_RS04730 (K7G92_000947) rec2 990932..993349 (-) 2418 WP_228403254.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7G92_RS04735 (K7G92_000948) dksA 993645..994082 (+) 438 WP_049213982.1 RNA polymerase-binding protein DksA -
  K7G92_RS04740 (K7G92_000949) pcnB 994309..995673 (+) 1365 WP_410173953.1 polynucleotide adenylyltransferase PcnB -
  K7G92_RS04745 (K7G92_000950) folK 995694..996179 (+) 486 WP_223668315.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K7G92_RS04750 (K7G92_000951) - 996229..997314 (-) 1086 WP_115322550.1 homoserine O-acetyltransferase -
  K7G92_RS04755 (K7G92_000952) - 997464..998177 (+) 714 WP_223668316.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 92299.65 Da        Isoelectric Point: 9.8607

>NTDB_id=620983 K7G92_RS04730 WP_228403254.1 990932..993349(-) (rec2) [Pasteurella canis strain HL_D3081]
MRLSIEQMSACILFSAVSLLWLPDFLLLTWQMTVVACLILLILLFVCYVSGKRQYTRFLILILCLLFNLGYMHAPAHQLL
SQADKVILLPKKVKIDFKIIEILHQTDYQTFIVSALLQKGEAEQRIYLQWHTKEKVQLGEVWHGELSLKPISSRLNFSGF
DKQQWYLAKRITARASVKSAVKLTQHFSWRDQLLKESLKQTEGLDYQGLLIALAFGERAWLPQQIWQIYQKTNTAHLIAI
SGLHIGLAMSIGYWIVRCVQILLPLRWIIPHLPMLSGLLLAYIYGQLAGFAIPTSRACIALFVIISCRLLRVSYNAWQLL
LIVTAILLLFDPLMILSLSFWLSISAVTCLVLWYQVFPFSLLQWQGKSISISPWHKVEWIIRIFHLQIGLLWLFTPFQLL
WFNGFSLSSFYANLIALPIYSLVLVPLVLFATFTQGAFSSWPIANEIAQKVTLILQTWQDNWHFVSQTETAFIITALTVL
FIIAVRSVYDVKKVDKTRRNLYCLNKPYFGFHFTAESTLFCSLKRSIYCIATLIVTSCLGYPIYQSFFASQWRLDMLDVG
QGLAVLITKNGRGILYDTGSAWRSGSMAQLEIVPYLQRQGISLEHVIISHDDNDHAGGAKTILQQYPKTTLTMASRQNYG
KTDRTFCLSGQKWYWQGLNIIVLSPHHIVTRAKNMDSCVLLISDGYNNVLLTGDADVASENQFVSQLDKIDVLQVGHHGS
KTSTGYALLQKTRPKIALISSGRWNQWKFPHKQVIQRLTQYQCQIYNTAETGQISLLFNKKQITIQRARTEFSPWYRRLI
GLQKK

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=620983 K7G92_RS04730 WP_228403254.1 990932..993349(-) (rec2) [Pasteurella canis strain HL_D3081]
ATGCGATTATCTATTGAACAAATGTCAGCTTGTATTTTATTCAGCGCAGTTTCATTACTTTGGTTACCTGATTTTTTATT
GCTCACTTGGCAGATGACAGTAGTCGCTTGTCTGATATTACTTATATTATTATTTGTTTGTTATGTTAGTGGAAAAAGAC
AATATACAAGATTTCTCATTTTGATACTTTGTCTTCTATTTAATCTAGGTTACATGCATGCTCCTGCCCATCAGTTATTA
TCTCAAGCTGATAAAGTCATTTTATTACCCAAAAAAGTAAAAATAGATTTTAAAATTATAGAGATACTTCATCAAACTGA
TTATCAAACCTTTATTGTGTCAGCGCTGTTACAAAAAGGAGAAGCCGAACAACGTATTTATCTGCAATGGCACACGAAAG
AAAAAGTTCAGTTGGGCGAAGTATGGCATGGAGAATTGTCCTTGAAACCTATTTCTTCACGGTTAAATTTTTCAGGTTTT
GATAAACAGCAATGGTATTTAGCCAAACGAATTACCGCACGAGCATCAGTAAAAAGTGCGGTTAAACTTACCCAACATTT
TTCATGGCGTGATCAATTACTTAAAGAGAGTTTAAAACAAACAGAAGGATTAGATTATCAAGGGCTTTTAATAGCGTTAG
CTTTTGGTGAGAGAGCGTGGTTACCACAACAAATATGGCAAATTTATCAAAAAACGAATACAGCACATCTTATAGCTATT
TCTGGACTACATATTGGATTAGCAATGAGTATAGGTTATTGGATAGTACGATGTGTTCAAATTTTATTACCATTACGCTG
GATTATCCCTCATTTACCGATGTTAAGCGGTTTACTATTAGCATATATTTATGGACAGCTAGCGGGGTTTGCAATACCAA
CCTCTCGTGCTTGTATAGCACTATTTGTGATTATAAGTTGTCGACTACTACGTGTTTCTTACAACGCTTGGCAACTTTTA
TTGATCGTCACGGCTATATTGCTATTGTTCGATCCATTAATGATTTTATCGTTGAGTTTTTGGCTATCAATAAGTGCGGT
AACGTGTTTAGTCCTCTGGTATCAGGTTTTTCCTTTTTCTTTATTGCAATGGCAAGGAAAATCCATATCTATCAGCCCTT
GGCATAAAGTAGAGTGGATTATTCGTATCTTTCACCTACAAATTGGCTTACTATGGCTTTTTACACCGTTCCAATTACTT
TGGTTTAATGGTTTTTCTTTAAGTAGCTTTTATGCGAATTTAATAGCGTTACCCATTTATAGTCTCGTATTAGTGCCTCT
TGTTTTGTTTGCGACTTTTACACAAGGTGCGTTCTCATCATGGCCTATCGCAAATGAGATAGCCCAAAAAGTGACGTTAA
TTTTGCAAACTTGGCAAGATAATTGGCATTTTGTTTCTCAAACAGAAACCGCATTCATTATTACTGCACTGACAGTACTT
TTTATCATAGCAGTTCGCTCTGTATACGATGTCAAAAAAGTAGATAAAACAAGGAGAAATCTATATTGTCTCAATAAACC
TTATTTTGGCTTCCATTTTACAGCTGAATCAACATTATTTTGTTCTTTAAAACGCTCAATTTATTGCATTGCAACTTTAA
TTGTGACTAGTTGTTTGGGTTATCCGATTTATCAATCTTTTTTTGCATCTCAATGGCGTTTGGATATGTTAGATGTGGGG
CAAGGATTAGCTGTCTTAATAACAAAAAATGGGCGAGGTATCTTATATGATACAGGAAGCGCATGGCGTAGTGGTAGTAT
GGCGCAGCTTGAGATTGTGCCATATTTACAACGACAAGGTATAAGTCTAGAACACGTAATTATTAGCCATGATGACAATG
ATCATGCAGGAGGAGCAAAAACAATCTTACAACAATATCCAAAGACCACACTGACGATGGCATCAAGGCAAAATTATGGC
AAAACAGACCGCACTTTTTGTCTTTCAGGGCAAAAATGGTATTGGCAAGGATTAAACATCATAGTGCTTTCACCTCATCA
TATTGTAACGCGTGCAAAGAATATGGACTCTTGTGTATTATTGATTTCTGATGGATACAATAACGTATTATTAACGGGGG
ATGCTGATGTTGCAAGTGAAAATCAATTTGTCTCTCAACTAGATAAAATTGATGTCTTACAAGTCGGACATCATGGGAGT
AAAACCTCGACAGGCTATGCACTATTACAAAAAACGCGGCCTAAAATCGCACTTATTTCAAGTGGACGTTGGAATCAGTG
GAAGTTTCCTCATAAACAAGTGATACAGCGTTTAACGCAGTATCAATGTCAAATTTACAATACGGCTGAGACAGGACAAA
TCAGTTTATTGTTTAATAAAAAACAAATTACAATTCAAAGAGCAAGAACAGAATTTTCACCTTGGTACCGTAGATTAATT
GGCTTACAAAAAAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-181)

Competence protein (Competence)

(213-483)

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.512

97.143

0.491