Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N565_RS07815 Genome accession   NC_022351
Coordinates   1487334..1487645 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni 00-2538     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482334..1492645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N565_RS07795 (N565_01502) ctsE 1483203..1484762 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  N565_RS07800 (N565_01503) ctsX 1484752..1485339 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N565_RS07805 (N565_01504) ctsP 1485343..1485951 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N565_RS07810 (N565_01505) ctsD 1485944..1487356 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N565_RS07815 (N565_01506) ctsR 1487334..1487645 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  N565_RS07820 (N565_01507) nifJ 1487669..1491229 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N565_RS07825 (N565_01508) - 1491322..1491963 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=62088 N565_RS07815 WP_002855438.1 1487334..1487645(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2538]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=62088 N565_RS07815 WP_002855438.1 1487334..1487645(-) (ctsR) [Campylobacter jejuni subsp. jejuni 00-2538]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment