Detailed information NTG0620859

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JK088_RS13425
• Genome accession: NZ_CP085857
• Coordinates: 2819061..2820050 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain LH214
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2814061..2825050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK088_RS13410 (JK088_13420)	-	2814236..2814764 (+)	529	Protein_2510	transposase	-
JK088_RS13415 (JK088_13425)	-	2814883..2816223 (-)	1341	WP_140103984.1	tyrosine-type recombinase/integrase	-
JK088_RS13420 (JK088_13430)	mutS	2816396..2818981 (+)	2586	WP_268206334.1	DNA mismatch repair protein MutS	-
JK088_RS13425 (JK088_13435)	rpoS	2819061..2820050 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
JK088_RS13430 (JK088_13440)	-	2820131..2821054 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
JK088_RS13435 (JK088_13445)	-	2821069..2821695 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JK088_RS13440 (JK088_13450)	surE	2821695..2822471 (-)	777	WP_017449149.1	5'/3'-nucleotidase SurE	-
JK088_RS13445 (JK088_13455)	truD	2822471..2823514 (-)	1044	WP_017449148.1	tRNA pseudouridine(13) synthase TruD	-
JK088_RS13450 (JK088_13460)	ispF	2823561..2824037 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JK088_RS13455 (JK088_13465)	ispD	2824055..2824759 (-)	705	WP_017449147.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JK088_RS13460 (JK088_13470)	ftsB	2824761..2825042 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=620859 JK088_RS13425 WP_005478537.1 2819061..2820050(-) (rpoS) [Vibrio parahaemolyticus strain LH214]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=620859 JK088_RS13425 WP_005478537.1 2819061..2820050(-) (rpoS) [Vibrio parahaemolyticus strain LH214]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAGCCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851