Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JK088_RS13135 Genome accession   NZ_CP085857
Coordinates   2753100..2753618 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain LH214     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748100..2758618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK088_RS13110 (JK088_13120) rimM 2748209..2748757 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  JK088_RS13115 (JK088_13125) rpsP 2748786..2749034 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  JK088_RS13120 (JK088_13130) ffh 2749244..2750626 (-) 1383 WP_005462555.1 signal recognition particle protein -
  JK088_RS13125 (JK088_13135) - 2750839..2751633 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  JK088_RS13130 (JK088_13140) - 2751759..2753039 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  JK088_RS13135 (JK088_13145) luxS 2753100..2753618 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  JK088_RS13140 (JK088_13150) - 2753685..2754290 (-) 606 WP_005484861.1 hypothetical protein -
  JK088_RS13145 (JK088_13155) gshA 2754315..2755883 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=620856 JK088_RS13135 WP_005462534.1 2753100..2753618(-) (luxS) [Vibrio parahaemolyticus strain LH214]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=620856 JK088_RS13135 WP_005462534.1 2753100..2753618(-) (luxS) [Vibrio parahaemolyticus strain LH214]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCCCCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884