Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NQK33_RS05795 Genome accession   NZ_CP103055
Coordinates   1147089..1147469 (-) Length   126 a.a.
NCBI ID   WP_002792200.1    Uniprot ID   -
Organism   Campylobacter coli strain YC3-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142089..1152469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQK33_RS05770 (NQK33_05770) aspS 1142601..1144352 (+) 1752 WP_057032542.1 aspartate--tRNA ligase -
  NQK33_RS05775 (NQK33_05775) - 1144349..1144924 (+) 576 WP_002781658.1 adenylate kinase -
  NQK33_RS05780 (NQK33_05780) ppa 1144935..1145453 (+) 519 WP_002776378.1 inorganic diphosphatase -
  NQK33_RS05785 (NQK33_05785) msrA 1145501..1146001 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  NQK33_RS05790 (NQK33_05790) - 1146224..1147078 (-) 855 WP_370658866.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  NQK33_RS05795 (NQK33_05795) dprB 1147089..1147469 (-) 381 WP_002792200.1 Holliday junction resolvase RuvX Machinery gene
  NQK33_RS05800 (NQK33_05800) dprA 1147466..1148236 (-) 771 WP_002792199.1 DNA-processing protein DprA Machinery gene
  NQK33_RS05805 (NQK33_05805) - 1148226..1149260 (-) 1035 WP_002825341.1 divergent polysaccharide deacetylase family protein -
  NQK33_RS05810 (NQK33_05810) ilvC 1149264..1150286 (-) 1023 WP_025398809.1 ketol-acid reductoisomerase -
  NQK33_RS05815 (NQK33_05815) - 1150409..1152343 (+) 1935 WP_258749822.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13922.31 Da        Isoelectric Point: 8.9633

>NTDB_id=620853 NQK33_RS05795 WP_002792200.1 1147089..1147469(-) (dprB) [Campylobacter coli strain YC3-24]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRTNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=620853 NQK33_RS05795 WP_002792200.1 1147089..1147469(-) (dprB) [Campylobacter coli strain YC3-24]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATCGATAAAATCGCCATTCCTTTAGA
GGGTATAATCAGAACAAATCGCAATCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCCAAAGGAGGTTCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421