Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQK33_RS03640 Genome accession   NZ_CP103055
Coordinates   725328..725876 (-) Length   182 a.a.
NCBI ID   WP_052780253.1    Uniprot ID   -
Organism   Campylobacter coli strain YC3-24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 720328..730876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQK33_RS03610 (NQK33_03610) ctsT 720370..720675 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  NQK33_RS03615 (NQK33_03615) proC 720672..721409 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  NQK33_RS03620 (NQK33_03620) fliW 721409..721798 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  NQK33_RS03625 (NQK33_03625) - 721963..722610 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  NQK33_RS03630 (NQK33_03630) lon 722626..725001 (+) 2376 WP_002777089.1 endopeptidase La -
  NQK33_RS03635 (NQK33_03635) rpsR 725057..725317 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  NQK33_RS03640 (NQK33_03640) ssb 725328..725876 (-) 549 WP_052780253.1 single-stranded DNA-binding protein Machinery gene
  NQK33_RS03645 (NQK33_03645) rpsF 725885..726262 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  NQK33_RS03650 (NQK33_03650) - 726541..727812 (+) 1272 WP_057030591.1 MFS transporter -
  NQK33_RS03655 (NQK33_03655) - 727812..728813 (+) 1002 WP_057030590.1 sugar phosphate isomerase/epimerase -
  NQK33_RS03660 (NQK33_03660) - 728806..729446 (-) 641 Protein_722 DUF535 family protein -
  NQK33_RS09170 - 729410..729661 (-) 252 WP_048813181.1 hypothetical protein -
  NQK33_RS03665 (NQK33_03665) rseP 729658..730761 (-) 1104 WP_224309574.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20747.64 Da        Isoelectric Point: 4.8501

>NTDB_id=620846 NQK33_RS03640 WP_052780253.1 725328..725876(-) (ssb) [Campylobacter coli strain YC3-24]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQTYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=620846 NQK33_RS03640 WP_052780253.1 725328..725876(-) (ssb) [Campylobacter coli strain YC3-24]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
CTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379