Detailed information NTG0620838

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JK088_RS01285
• Genome accession: NZ_CP085857
• Coordinates: 270433..271440 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain LH214
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 265433..276440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK088_RS01250 (JK088_01250)	-	265620..266051 (-)	432	WP_029833366.1	DUF2787 domain-containing protein	-
JK088_RS01255 (JK088_01255)	radC	266048..266521 (-)	474	WP_023624904.1	RadC family protein	-
JK088_RS01260 (JK088_01260)	-	266692..266841 (+)	150	WP_023624903.1	AlpA family phage regulatory protein	-
JK088_RS01265 (JK088_01265)	-	267002..267226 (+)	225	WP_023624902.1	hypothetical protein	-
JK088_RS01270 (JK088_01270)	hslU	267640..268971 (-)	1332	WP_029833367.1	HslU--HslV peptidase ATPase subunit	-
JK088_RS01275 (JK088_01275)	hslV	268995..269546 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
JK088_RS01280 (JK088_01280)	ftsN	269711..270256 (-)	546	WP_005481405.1	cell division protein FtsN	-
JK088_RS01285 (JK088_01285)	cytR	270433..271440 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
JK088_RS01290 (JK088_01290)	priA	271773..273977 (-)	2205	WP_029833368.1	primosomal protein N'	-
JK088_RS01295 (JK088_01295)	rpmE	274272..274493 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
JK088_RS01300 (JK088_01300)	rpsJ	274951..275262 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
JK088_RS01305 (JK088_01305)	rplC	275277..275906 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=620838 JK088_RS01285 WP_005481416.1 270433..271440(-) (cytR) [Vibrio parahaemolyticus strain LH214]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=620838 JK088_RS01285 WP_005481416.1 270433..271440(-) (cytR) [Vibrio parahaemolyticus strain LH214]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904