Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LJY22_RS18570 Genome accession   NZ_CP085844
Coordinates   864060..865157 (-) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio diabolicus strain NV27     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 859060..870157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS18555 (LJY22_18540) - 859638..860696 (-) 1059 WP_104972361.1 HlyD family secretion protein -
  LJY22_RS18560 (LJY22_18545) - 860732..861187 (-) 456 WP_005397727.1 MarR family transcriptional regulator -
  LJY22_RS18565 (LJY22_18550) luxQ 861484..864060 (-) 2577 WP_048624830.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  LJY22_RS18570 (LJY22_18555) luxP 864060..865157 (-) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LJY22_RS18575 (LJY22_18560) - 865478..865798 (-) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  LJY22_RS18580 (LJY22_18565) - 865795..866445 (-) 651 WP_047008119.1 YceH family protein -
  LJY22_RS18585 (LJY22_18570) - 866611..866814 (-) 204 WP_031780656.1 hypothetical protein -
  LJY22_RS18590 (LJY22_18575) - 867056..867370 (+) 315 WP_005373603.1 DUF496 family protein -
  LJY22_RS18595 (LJY22_18580) - 867492..868829 (+) 1338 WP_257898010.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=620834 LJY22_RS18570 WP_005397733.1 864060..865157(-) (luxP) [Vibrio diabolicus strain NV27]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=620834 LJY22_RS18570 WP_005397733.1 864060..865157(-) (luxP) [Vibrio diabolicus strain NV27]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAACGTCCGTTAAAAATTTCTGTGGTTTATCCAGGCCAACAGATTTCGGAT
TATTGGATTCGAAATATAGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTTATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAGAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCAGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGATATATCAGCGATA
TCAGAGGCAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACCAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641