Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LJY22_RS09680 Genome accession   NZ_CP085843
Coordinates   2122857..2124263 (-) Length   468 a.a.
NCBI ID   WP_257896847.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117857..2129263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS09645 (LJY22_09640) moaE 2118384..2118839 (-) 456 WP_257896845.1 molybdopterin synthase catalytic subunit MoaE -
  LJY22_RS09650 (LJY22_09645) moaD 2118841..2119098 (-) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  LJY22_RS09655 (LJY22_09650) moaC 2119095..2119574 (-) 480 WP_257896846.1 cyclic pyranopterin monophosphate synthase MoaC -
  LJY22_RS09660 (LJY22_09655) moaB 2119601..2120113 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  LJY22_RS09665 (LJY22_09660) moaA 2120219..2121208 (-) 990 WP_006742808.1 GTP 3',8-cyclase MoaA -
  LJY22_RS09670 (LJY22_09665) - 2121507..2122403 (+) 897 WP_006742807.1 YvcK family protein -
  LJY22_RS09675 (LJY22_09670) luxU 2122516..2122860 (-) 345 WP_226420971.1 quorum-sensing phosphorelay protein LuxU -
  LJY22_RS09680 (LJY22_09675) luxO 2122857..2124263 (-) 1407 WP_257896847.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LJY22_RS09685 (LJY22_09680) uvrB 2124557..2126587 (-) 2031 WP_257896848.1 excinuclease ABC subunit UvrB -
  LJY22_RS09695 (LJY22_09690) rsxA 2127550..2128128 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  LJY22_RS09700 (LJY22_09695) rsxB 2128132..2128728 (+) 597 WP_005396655.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52161.70 Da        Isoelectric Point: 6.4238

>NTDB_id=620805 LJY22_RS09680 WP_257896847.1 2122857..2124263(-) (luxO) [Vibrio diabolicus strain NV27]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESRNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=620805 LJY22_RS09680 WP_257896847.1 2122857..2124263(-) (luxO) [Vibrio diabolicus strain NV27]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCGCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTTTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCTGACCGCTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGCTAAAAA
ACGAGGCTGATAACCCGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACTGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTGCGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTTTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTTATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCATCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.082

95.94

0.835