Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LJY22_RS07230 Genome accession   NZ_CP085843
Coordinates   1594407..1595930 (-) Length   507 a.a.
NCBI ID   WP_150918671.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589407..1600930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS07210 (LJY22_07205) - 1589415..1590845 (-) 1431 WP_006742944.1 lipopolysaccharide biosynthesis protein -
  LJY22_RS07215 (LJY22_07210) - 1590838..1592010 (-) 1173 WP_257897419.1 glycosyltransferase family 4 protein -
  LJY22_RS07220 (LJY22_07215) - 1592022..1593206 (-) 1185 WP_257897420.1 glycosyltransferase -
  LJY22_RS07225 (LJY22_07220) - 1593362..1594432 (-) 1071 WP_124008848.1 glycosyltransferase family 4 protein -
  LJY22_RS07230 (LJY22_07225) luxO 1594407..1595930 (-) 1524 WP_150918671.1 sigma-54 dependent transcriptional regulator Regulator
  LJY22_RS07235 (LJY22_07230) - 1596206..1596586 (-) 381 WP_046875251.1 Hpt domain-containing protein -
  LJY22_RS07240 (LJY22_07235) - 1596598..1597284 (-) 687 WP_257897421.1 AAA family ATPase -
  LJY22_RS07245 (LJY22_07240) - 1597284..1599386 (-) 2103 WP_005394266.1 SLBB domain-containing protein -
  LJY22_RS07250 (LJY22_07245) - 1599383..1600249 (-) 867 WP_046875254.1 OmpA family protein -
  LJY22_RS07255 (LJY22_07250) - 1600276..1600596 (-) 321 WP_005394270.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56823.70 Da        Isoelectric Point: 6.0406

>NTDB_id=620803 LJY22_RS07230 WP_150918671.1 1594407..1595930(-) (luxO) [Vibrio diabolicus strain NV27]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTLNHLPAQLTRKSKTARTSTPA
HVTQEPANPTTITSQPVYVEEQLAPAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=620803 LJY22_RS07230 WP_150918671.1 1594407..1595930(-) (luxO) [Vibrio diabolicus strain NV27]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTATTGGATTGGATCAACCAGAATGACATTCCTACCTCAGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
CGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAACTGGAAGATTTAGTAGAAAACATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACTATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCTATTAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATTTTTGGCC
ACGTCAAAGGCGCATTTACCGGGGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGGACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTCCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGTGAGCGAGGAAGTGACATC
GTCACGTTGGCCAAGCACTTTTTGACCACTTATGCTAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTGCAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGCTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACAGCGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCAAACCCTACAACAATAACATCCCAACCTGTGTATGTTGAGGAACAGTTGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCCTCAGCGGCTGCCTCTCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAACGCGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTTCTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAGCAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.239

0.485