Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJY22_RS06420 Genome accession   NZ_CP085843
Coordinates   1407927..1409348 (-) Length   473 a.a.
NCBI ID   WP_256954979.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1402927..1414348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS06395 (LJY22_06390) - 1403443..1404093 (+) 651 WP_139059902.1 thiopurine S-methyltransferase -
  LJY22_RS06400 (LJY22_06395) purT 1404166..1405341 (-) 1176 WP_257897354.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LJY22_RS06405 (LJY22_06400) cdd 1405487..1406374 (-) 888 WP_005397788.1 cytidine deaminase -
  LJY22_RS06410 (LJY22_06405) - 1406818..1407495 (-) 678 WP_257897355.1 LrgB family protein -
  LJY22_RS06415 (LJY22_06410) - 1407497..1407871 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  LJY22_RS06420 (LJY22_06415) sbcB 1407927..1409348 (-) 1422 WP_256954979.1 exodeoxyribonuclease I Machinery gene
  LJY22_RS06425 (LJY22_06420) - 1409505..1410878 (-) 1374 WP_257897356.1 L-cystine transporter -
  LJY22_RS06430 (LJY22_06425) - 1411079..1411768 (-) 690 WP_257897357.1 NAD(P)H-binding protein -
  LJY22_RS06435 (LJY22_06430) cobT 1412016..1413059 (+) 1044 WP_253651527.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  LJY22_RS06440 (LJY22_06435) - 1413059..1413865 (+) 807 WP_046874846.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.59 Da        Isoelectric Point: 4.8162

>NTDB_id=620802 LJY22_RS06420 WP_256954979.1 1407927..1409348(-) (sbcB) [Vibrio diabolicus strain NV27]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKQIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=620802 LJY22_RS06420 WP_256954979.1 1407927..1409348(-) (sbcB) [Vibrio diabolicus strain NV27]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCCGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGCTGGG
ATTTACTCGATGTGCTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCTGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGCAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797