Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LJY22_RS01255 Genome accession   NZ_CP085843
Coordinates   272913..273920 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 267913..278920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS01235 (LJY22_01235) - 268235..269152 (-) 918 WP_047009017.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LJY22_RS01240 (LJY22_01240) hslU 270127..271458 (-) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  LJY22_RS01245 (LJY22_01245) hslV 271482..272033 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  LJY22_RS01250 (LJY22_01250) ftsN 272149..272697 (-) 549 WP_017820300.1 cell division protein FtsN -
  LJY22_RS01255 (LJY22_01255) cytR 272913..273920 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  LJY22_RS01260 (LJY22_01260) priA 274246..276447 (-) 2202 WP_257897142.1 primosomal protein N' -
  LJY22_RS01265 (LJY22_01265) rpmE 276743..276964 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  LJY22_RS01270 (LJY22_01270) rpsJ 277420..277731 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  LJY22_RS01275 (LJY22_01275) rplC 277746..278375 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=620792 LJY22_RS01255 WP_005379543.1 272913..273920(-) (cytR) [Vibrio diabolicus strain NV27]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=620792 LJY22_RS01255 WP_005379543.1 272913..273920(-) (cytR) [Vibrio diabolicus strain NV27]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCATTAATGAACCCAGAGAA
GGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGC
ATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGTTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCGGATGGAATGCTACTGCTTGGCACAGATCTACCGTTCGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTTCCAACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATCGCGCAAATCTCGGGTCCAGATAC
GGCAATATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGCCGTGCAGGCATCAATAAAGACCCTCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTACCTGAGCCACCAACAGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCCGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTTTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893