Detailed information NTG0062074

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: N565_RS05955
• Genome accession: NC_022351
• Coordinates: 1122878..1123837 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni 00-2538
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1117878..1128837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N565_RS05930 (N565_01151)	neuC	1118443..1119558 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
N565_RS09670	-	1119555..1120469 (+)	915	Protein_1147	beta-1,4-N-acetylgalactosaminyltransferase	-
N565_RS09675	-	1120503..1121165 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
N565_RS05945 (N565_02255)	-	1121160..1122011 (-)	852	WP_014516804.1	glycosyltransferase	-
N565_RS05950 (N565_01155)	waaV	1121995..1122819 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
N565_RS05955 (N565_01156)	waaF	1122878..1123837 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
N565_RS05960 (N565_01157)	gmhA	1123818..1124378 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
N565_RS05965 (N565_01158)	rfaE1	1124375..1125760 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
N565_RS05970 (N565_01159)	rfaD	1125753..1126706 (-)	954	WP_002858041.1	ADP-glyceromanno-heptose 6-epimerase	-
N565_RS05975 (N565_01160)	gmhB	1126707..1127267 (-)	561	WP_002853963.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
N565_RS05980 (N565_01161)	-	1127349..1127651 (+)	303	WP_002852762.1	cytochrome c	-
N565_RS05985 (N565_01162)	ccoS	1127674..1127880 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=62074 N565_RS05955 WP_002875425.1 1122878..1123837(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2538]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=62074 N565_RS05955 WP_002875425.1 1122878..1123837(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2538]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1